Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5932_RS19855 Genome accession   NZ_CP104645
Coordinates   4088144..4088773 (+) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli strain PNUSAE019785     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4083144..4093773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5932_RS19835 (N5932_19835) ycbZ 4083546..4085306 (-) 1761 WP_000156526.1 Lon protease family protein -
  N5932_RS19840 (N5932_19840) matP 4085492..4085944 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5932_RS19845 (N5932_19845) ompA 4086019..4087059 (-) 1041 WP_000750416.1 porin OmpA -
  N5932_RS19850 (N5932_19850) sulA 4087416..4087925 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N5932_RS19855 (N5932_19855) sxy/tfoX 4088144..4088773 (+) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5932_RS19860 (N5932_19860) yccS 4088736..4090898 (-) 2163 WP_000875023.1 YccS family putative transporter -
  N5932_RS19865 (N5932_19865) yccF 4090908..4091354 (-) 447 WP_001261230.1 YccF domain-containing protein -
  N5932_RS19870 (N5932_19870) helD 4091477..4093531 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=632080 N5932_RS19855 WP_000839159.1 4088144..4088773(+) (sxy/tfoX) [Escherichia coli strain PNUSAE019785]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=632080 N5932_RS19855 WP_000839159.1 4088144..4088773(+) (sxy/tfoX) [Escherichia coli strain PNUSAE019785]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995