Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LP097_RS13340 Genome accession   NZ_CP087803
Coordinates   2574690..2577026 (-) Length   778 a.a.
NCBI ID   WP_264696693.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM57947     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2569690..2582026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP097_RS13325 (LP097_13215) - 2572311..2572838 (-) 528 WP_078274802.1 cytochrome b -
  LP097_RS13330 (LP097_13220) - 2572923..2573423 (-) 501 WP_029103932.1 hypothetical protein -
  LP097_RS13335 (LP097_13225) - 2573550..2574659 (-) 1110 WP_228157717.1 chemotaxis response regulator protein-glutamate methylesterase -
  LP097_RS13340 (LP097_13230) chpA 2574690..2577026 (-) 2337 WP_264696693.1 response regulator Regulator

Sequence


Protein


Download         Length: 778 a.a.        Molecular weight: 86745.18 Da        Isoelectric Point: 4.7887

>NTDB_id=631532 LP097_RS13340 WP_264696693.1 2574690..2577026(-) (chpA) [Moraxella bovis strain SAM57947]
MPDKDILGVFLEEAKELAESSSENFAAFRNNTSDVASLQALQRKLHTIKGGARMVSANGVADLAHEMETVYEGLGNRRLP
ATRMVANLLFACHDWITSAVGLLEHNYNPPRPTPLVDALHRFIKNPDDLNEVPVVSLENEIDFINEYQAFLAESKNTRDI
SRMPPMKGMFGESVDSSSNNEMIRISAPLLERMINLSGEAAINRARIDMNLASITGSIEEMGVTVQRLFDQLRRMDIELE
EQILAQIDDGTFDEDFDPLEMDQYSSLNQLSKSLSESASDLLDIKATMLDKTRDGENLLLQLSRTQADLQDSLMNSRMVP
FSRLTPRLQRIVRQTASELGKNVELTVINADDEMDRSILDRITSPLEHMLRNAVDHGVEMPAKRSELGKPLTGHITLEVL
REGGEMVILLSDDGAGVNVDAVRNKAISQGLIHPDEQLADNDIMQYIFNAGLSTTNKVTQISGRGVGMDVVRTEIRQLGG
SVSVESEFGRGSRFIIRVPLTVSVSDALIVRVADRQYAIPLVQIERVVQMNATELLTYHQSGNNTIKIDNKNYRLRYLNE
ILTGNYFNEIVSGTTLPVIIIKTQTGQALALQVDEIVGSRIEIVVKPLGRQLSNLSGISAATIMGDGSVMLILDLLALMR
TAQAKRENKEVEPVVSRRHLIMVVDDSVTVRKVTSRFLERQGFEVIVAKDGVDAIEILQDNMPDLMLLDIEMPRMDGFEV
ATQVRHSPRLSHLPIIMITSRTGEKHRDRAFEIGVNDYMGKPFQEVELLERIGKLLNI

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=631532 LP097_RS13340 WP_264696693.1 2574690..2577026(-) (chpA) [Moraxella bovis strain SAM57947]
TTGCCTGACAAAGACATCTTGGGTGTATTCTTAGAAGAAGCTAAAGAGCTTGCTGAGAGCAGTAGTGAGAACTTTGCGGC
GTTTCGTAATAACACATCGGACGTGGCAAGTTTGCAAGCATTGCAACGTAAGCTACACACCATCAAAGGTGGAGCAAGAA
TGGTCTCTGCCAATGGCGTGGCTGACCTCGCTCACGAGATGGAAACGGTCTATGAGGGCTTGGGTAACCGCCGTCTGCCT
GCAACACGTATGGTGGCAAATCTACTCTTTGCCTGTCATGATTGGATTACATCAGCAGTTGGGCTGCTAGAACATAACTA
CAACCCACCTCGCCCTACGCCGTTAGTAGATGCTTTGCACCGTTTCATCAAAAACCCCGATGACCTAAACGAAGTGCCTG
TGGTGTCGCTTGAGAATGAAATTGATTTCATCAATGAATATCAAGCCTTCTTGGCAGAATCAAAAAATACCCGTGATATC
AGCCGCATGCCACCCATGAAAGGTATGTTTGGAGAAAGTGTGGACAGTAGCAGTAACAATGAGATGATTCGTATCTCAGC
CCCACTGCTTGAACGCATGATTAACTTGTCAGGCGAGGCGGCGATTAACCGTGCTCGTATTGACATGAACCTTGCTAGTA
TCACAGGCAGTATCGAGGAGATGGGGGTTACGGTTCAGCGTCTGTTTGACCAGCTACGTCGCATGGATATTGAACTAGAA
GAGCAGATTCTGGCACAGATTGATGATGGTACGTTTGATGAAGATTTTGACCCCTTGGAGATGGACCAGTATTCGTCACT
TAACCAGTTGTCCAAATCACTCTCGGAGTCAGCATCAGACTTGCTAGACATTAAAGCGACCATGCTAGACAAAACCCGTG
ATGGTGAAAACTTGTTGTTACAATTATCACGTACCCAAGCAGACTTGCAGGACAGTCTGATGAATTCACGGATGGTGCCA
TTTTCACGACTGACCCCACGCCTCCAACGCATTGTGCGTCAAACCGCAAGCGAGCTTGGCAAGAACGTAGAGCTGACGGT
GATTAATGCTGATGATGAGATGGATAGAAGTATTCTTGACCGCATTACATCACCGCTAGAACACATGCTTCGTAATGCTG
TTGACCATGGTGTTGAGATGCCTGCTAAGCGTAGTGAGCTTGGCAAACCATTAACAGGTCATATCACGTTAGAGGTGCTA
CGTGAAGGGGGTGAGATGGTTATCTTGCTATCTGATGATGGGGCAGGCGTGAATGTAGATGCGGTACGTAATAAGGCCAT
CAGTCAAGGATTGATTCACCCCGACGAACAGCTTGCTGATAACGACATCATGCAGTATATCTTTAATGCAGGTCTGTCCA
CCACAAACAAAGTAACCCAAATCTCAGGTCGTGGCGTGGGTATGGATGTGGTGCGTACAGAGATTCGTCAATTGGGTGGT
TCGGTATCAGTGGAGTCGGAGTTTGGTAGGGGCTCTCGTTTTATCATCCGTGTGCCATTGACTGTATCTGTGTCAGATGC
ACTCATCGTGCGTGTGGCTGACCGCCAATACGCCATCCCGCTGGTGCAGATTGAGCGTGTGGTGCAGATGAATGCCACAG
AACTATTAACCTATCATCAATCGGGCAATAACACCATCAAGATTGATAACAAAAACTATCGTTTGCGTTATCTTAATGAA
ATCTTAACAGGCAATTATTTTAATGAGATTGTCTCAGGTACGACCCTGCCTGTAATTATCATCAAAACTCAGACAGGGCA
AGCCCTTGCTTTGCAGGTAGATGAGATTGTGGGTTCTCGTATTGAGATTGTGGTCAAGCCATTAGGTCGTCAGCTTTCTA
ACCTATCGGGAATCTCGGCAGCAACCATCATGGGTGATGGCTCGGTCATGCTCATCCTTGATCTGTTGGCACTCATGCGT
ACCGCTCAGGCGAAACGAGAAAACAAAGAGGTGGAACCTGTCGTCAGCCGTCGTCACCTCATCATGGTGGTAGACGATTC
TGTGACGGTACGCAAGGTCACATCTCGTTTCTTAGAACGTCAAGGTTTTGAGGTTATCGTTGCCAAAGATGGCGTTGATG
CCATTGAGATTTTACAAGACAATATGCCCGATTTGATGCTACTTGACATTGAGATGCCACGCATGGATGGTTTTGAGGTC
GCAACTCAGGTGCGTCACAGTCCCCGTTTGAGTCATTTGCCAATCATCATGATTACATCGCGAACGGGCGAAAAGCATCG
AGACCGTGCCTTCGAGATTGGTGTTAATGACTACATGGGTAAGCCGTTCCAAGAAGTGGAGCTTTTGGAACGTATTGGCA
AACTGCTAAACATTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

50.318

100

0.509