Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPW13_RS11825 Genome accession   NZ_CP087715
Coordinates   2814079..2814657 (-) Length   192 a.a.
NCBI ID   WP_230435625.1    Uniprot ID   -
Organism   Microbulbifer celer strain KCTC 12973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2809079..2819657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPW13_RS11805 (LPW13_11805) galU 2810181..2811017 (-) 837 WP_230435619.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LPW13_RS11810 (LPW13_11810) fabA 2811272..2811796 (+) 525 WP_230435621.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  LPW13_RS11815 (LPW13_11815) fabB 2811875..2813098 (+) 1224 WP_230435622.1 beta-ketoacyl-ACP synthase I -
  LPW13_RS11820 (LPW13_11820) - 2813208..2814062 (-) 855 WP_230435624.1 sugar nucleotide-binding protein -
  LPW13_RS11825 (LPW13_11825) ssb 2814079..2814657 (-) 579 WP_230435625.1 single-stranded DNA-binding protein Machinery gene
  LPW13_RS11830 (LPW13_11830) - 2814821..2815993 (-) 1173 WP_230435627.1 MFS transporter -
  LPW13_RS11835 (LPW13_11835) - 2816146..2817549 (-) 1404 WP_230435628.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20851.72 Da        Isoelectric Point: 4.9930

>NTDB_id=631178 LPW13_RS11825 WP_230435625.1 2814079..2814657(-) (ssb) [Microbulbifer celer strain KCTC 12973]
MASRGVNKVILVGNLGADPETRYMPSGGAVTNINVATSETWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYL
EGSLRTRKWQDKTTGQDRFTTEIVAGEMQMLDSRGEGGFQPGQGGGYGQNQNQGGGFAQNQGGYQDEYAQGRSAPSPMAP
GSQQQAPQNQGGNQPQPPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=631178 LPW13_RS11825 WP_230435625.1 2814079..2814657(-) (ssb) [Microbulbifer celer strain KCTC 12973]
ATGGCCAGCAGGGGCGTGAACAAAGTAATTCTGGTTGGCAACCTGGGGGCAGACCCCGAAACCCGTTACATGCCCAGTGG
CGGCGCGGTGACCAATATCAACGTCGCTACGTCTGAAACCTGGAAAGACAAGCAGACCGGTCAGCAGCAGGAGCGCACCG
AGTGGCACCGGGTGGTGTTCTTCAACCGCCTGGCAGAGATCGCCGGCGAATACCTGCGCAAGGGTAGCAAGGTGTACCTG
GAAGGCTCCCTGCGCACCCGCAAATGGCAGGACAAGACGACCGGCCAGGATCGCTTCACCACCGAGATTGTCGCCGGCGA
AATGCAGATGCTCGACAGCCGCGGGGAAGGCGGCTTCCAGCCGGGGCAGGGCGGTGGCTACGGCCAGAACCAGAATCAGG
GGGGCGGCTTTGCCCAGAACCAGGGCGGTTATCAGGACGAGTACGCCCAGGGCCGCTCAGCGCCTTCGCCGATGGCACCG
GGCAGCCAGCAGCAGGCGCCCCAGAACCAGGGCGGCAACCAGCCGCAACCCCCGGCGGGCGGTTTTGACAACAGCTTCGA
CGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.281

100

0.583
  ssb Glaesserella parasuis strain SC1401

55.556

98.438

0.547
  ssb Neisseria gonorrhoeae MS11

47.917

100

0.479
  ssb Neisseria meningitidis MC58

47.396

100

0.474