Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LO011_RS17495 Genome accession   NZ_CP087340
Coordinates   3592586..3593167 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain DB008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3587586..3598167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS17470 - 3587605..3589104 (+) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -
  LO011_RS17475 - 3589165..3590607 (-) 1443 WP_005134537.1 amino acid permease -
  LO011_RS17480 - 3590913..3591461 (-) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  LO011_RS17485 - 3591530..3592225 (+) 696 WP_005109295.1 AzlC family ABC transporter permease -
  LO011_RS17490 - 3592222..3592545 (+) 324 WP_000082712.1 AzlD domain-containing protein -
  LO011_RS17495 ssb 3592586..3593167 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  LO011_RS17500 - 3593219..3594583 (-) 1365 WP_000980460.1 MFS transporter -
  LO011_RS17505 - 3594730..3595812 (-) 1083 WP_000680213.1 DUF475 domain-containing protein -
  LO011_RS17510 tenA 3596075..3596749 (+) 675 WP_000899418.1 thiaminase II -
  LO011_RS17515 - 3596799..3597140 (-) 342 WP_000263329.1 GlpM family protein -
  LO011_RS17520 - 3597193..3597546 (-) 354 WP_005134534.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=628951 LO011_RS17495 WP_001215080.1 3592586..3593167(-) (ssb) [Acinetobacter baumannii strain DB008]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=628951 LO011_RS17495 WP_001215080.1 3592586..3593167(-) (ssb) [Acinetobacter baumannii strain DB008]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394