Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   XFF4834R_RS08355 Genome accession   NC_022541
Coordinates   1964962..1966092 (+) Length   376 a.a.
NCBI ID   WP_003489921.1    Uniprot ID   A0AAI7ZGP8
Organism   Xanthomonas citri pv. fuscans     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1959962..1971092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFF4834R_RS08330 (XFF4834R_chr17110) - 1960077..1960718 (-) 642 WP_007966167.1 M23 family metallopeptidase -
  XFF4834R_RS08335 (XFF4834R_chr17120) - 1960821..1961246 (-) 426 WP_008571830.1 HU family DNA-binding protein -
  XFF4834R_RS08340 (XFF4834R_chr17130) proC 1961811..1962665 (-) 855 WP_022558865.1 pyrroline-5-carboxylate reductase -
  XFF4834R_RS08345 (XFF4834R_chr17140) - 1962709..1963401 (-) 693 WP_022558866.1 YggS family pyridoxal phosphate-dependent enzyme -
  XFF4834R_RS08350 (XFF4834R_chr17150) pilT 1963812..1964849 (+) 1038 WP_022558867.1 type IV pilus twitching motility protein PilT Machinery gene
  XFF4834R_RS08355 (XFF4834R_chr17160) pilU 1964962..1966092 (+) 1131 WP_003489921.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  XFF4834R_RS08360 (XFF4834R_chr17180) - 1966594..1967268 (+) 675 WP_022558869.1 YitT family protein -
  XFF4834R_RS08365 (XFF4834R_chr17190) - 1967443..1968369 (-) 927 WP_173644273.1 DUF72 domain-containing protein -
  XFF4834R_RS08370 (XFF4834R_chr17200) - 1968377..1968949 (-) 573 WP_022558871.1 DNA-3-methyladenine glycosylase I -
  XFF4834R_RS08380 (XFF4834R_chr17210) - 1969217..1969783 (+) 567 WP_003489930.1 YqgE/AlgH family protein -
  XFF4834R_RS08385 (XFF4834R_chr17220) ruvX 1969776..1970243 (+) 468 WP_003489932.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42044.26 Da        Isoelectric Point: 6.8286

>NTDB_id=62724 XFF4834R_RS08355 WP_003489921.1 1964962..1966092(+) (pilU) [Xanthomonas citri pv. fuscans]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLPPVIKTLSMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEISEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=62724 XFF4834R_RS08355 WP_003489921.1 1964962..1966092(+) (pilU) [Xanthomonas citri pv. fuscans]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGACCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGCCCGATTACCCAGACCCCGCTGACCGCGCAGCAAAGTCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCCGGG
GTCGGGCGTTTTCGTGTGAGCTGCTTCTACCAGCGTAATCAGGTGGGCATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGCTGAGCTTGCCGCCGGTGATCAAGACGCTGTCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGGACCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGTAACCAGAACTCGACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCATGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGTTGTGTACGCTGCACGCCAACAACGCCAACCAGGCGATG
GATCGCATCATCAACTTCTTCCCCGAAGATCGCCGCAACCAGCTATTGATGGATCTGTCGCTCAACCTCAAGGGCGTGGT
CGCGCAGCAGCTGATTCCGACCCCGGATGGCCGCAGCCGGCGCGTGGCGATGGAAATCATGTTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCTTGTTCGAGCTCTACCAGGCCGGCGAAATCAGCTACGAAGATGCGTTGCGCTACGCCGACTCGCAGAACGA
AGTGCGCCTGCGCATCAAGCTCTCGCAGGGGGGCGATGCCAAGACCTTGTCGCAGGGCCTGGACGGTGTAGAGATTTCCG
AAGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(118-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.757

97.606

0.652
  pilU Acinetobacter baylyi ADP1

64.146

94.947

0.609
  pilU Vibrio cholerae strain A1552

52.809

94.681

0.5
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.457

94.947

0.394
  pilT Pseudomonas aeruginosa PAK

40.896

89.096

0.364
  pilT Acinetobacter nosocomialis M2

39.826

91.489

0.364
  pilT Acinetobacter baumannii D1279779

39.826

91.489

0.364
  pilT Acinetobacter baumannii strain A118

39.826

91.489

0.364

Multiple sequence alignment