Detailed information NTG0627023

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LN047_RS24315
• Genome accession: NZ_CP087159
• Coordinates: 5270598..5271662 (-)
• Length: 354 a.a.
• NCBI ID: WP_373982181.1
• Uniprot ID: -
• Organism: Achromobacter sp. JD417
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5265598..5276662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN047_RS24295 (LN047_24230)	phnC	5266201..5266971 (+)	771	WP_175156063.1	phosphonate ABC transporter ATP-binding protein	-
LN047_RS24300 (LN047_24235)	phnE	5266968..5267855 (+)	888	WP_062839588.1	phosphonate ABC transporter, permease protein PhnE	-
LN047_RS24305 (LN047_24240)	phnE	5267852..5268676 (+)	825	WP_056325416.1	phosphonate ABC transporter, permease protein PhnE	-
LN047_RS24310 (LN047_24245)	-	5268923..5270581 (+)	1659	WP_373980446.1	CHAD domain-containing protein	-
LN047_RS24315 (LN047_24250)	pilA	5270598..5271662 (-)	1065	WP_373982181.1	signal recognition particle-docking protein FtsY	Machinery gene
LN047_RS24320 (LN047_24255)	rsmD	5272147..5272752 (+)	606	WP_056325409.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LN047_RS24325 (LN047_24260)	coaD	5272771..5273274 (+)	504	WP_056325406.1	pantetheine-phosphate adenylyltransferase	-
LN047_RS24330 (LN047_24265)	-	5273389..5273640 (+)	252	WP_042795127.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LN047_RS24335 (LN047_24270)	-	5273637..5274860 (+)	1224	WP_175156067.1	benzoate/H(+) symporter BenE family transporter	-
LN047_RS24340 (LN047_24275)	-	5274880..5275266 (-)	387	WP_373980447.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 36887.56 Da
• Isoelectric Point: 7.4073

>NTDB_id=627023 LN047_RS24315 WP_373982181.1 5270598..5271662(-) (pilA) [Achromobacter sp. JD417]
MAPSLAPVVPAPAPVSTPAFVPEPVSTPAPVAAPAPVVAAVPEPALAEAPKKTSWLSRLKQGLSRTGQSIGGIFVGVKVD
ENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERAFDLKRTQPLVVMIAGVNGA
GKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVSVISQDGGDPAAVAFDSVNAGRARGMGVVMVDTAG
RLPTQLHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQ
GVRPVPVYWIGVGESLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1065 bp

>NTDB_id=627023 LN047_RS24315 WP_373982181.1 5270598..5271662(-) (pilA) [Achromobacter sp. JD417]
ATCGCGCCCTCGCTTGCACCCGTGGTCCCGGCGCCTGCGCCGGTATCAACGCCTGCGTTTGTACCCGAGCCAGTATCAAC
GCCTGCCCCTGTCGCAGCCCCCGCACCCGTCGTTGCAGCCGTCCCGGAACCCGCACTCGCCGAGGCGCCCAAGAAAACCT
CGTGGCTGTCGCGCCTGAAGCAGGGCCTGTCCCGCACCGGCCAGAGCATTGGCGGCATCTTCGTCGGCGTAAAGGTCGAC
GAGAACCTGTTCGAGGAACTCGAATCGGCCCTCATTATGGCCGATGCGGGCCTTGAGGCCACCGAGAAGCTCCTGACCGC
GCTGCGCGCGCGCGTCAAGAAGGAACGCATCGAGGACCCGGCCAAGGTGAAGACGGCCCTGCGCCAGTTGCTGGCCGATC
ATCTGCGCCCGCTGGAGCGTGCGTTTGACCTGAAGCGCACGCAACCGCTGGTGGTGATGATTGCCGGTGTGAACGGCGCG
GGCAAGACGACTTCCATCGGCAAGCTGGCGCATACGTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCCGGCGACAC
CTTCCGCGCCGCCGCGCGCGAGCAACTGGTGGAATGGGGCAGCCGCAACAACGTCAGCGTGATTTCGCAGGACGGCGGCG
ATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGCCGCGCACGCGGCATGGGCGTGGTGATGGTGGATACCGCCGGC
CGCCTGCCCACGCAGCTGCACCTGATGGAAGAACTGAAGAAGATCCGCCGCGTCATCGGCAAGGCGGATGCGTCCGCGCC
GCATGAGGTGCTGCTGGTGGTGGACGGCAACACGGGTCAGAATGCGCTGGCGCAGATCCGCGCGTTTGACGCTGCCATCA
ACCTGACCGGTCTGGTCGTGACCAAGCTGGACGGCACGGCCAAGGGCGGCACGCTGGCGGCCGTTGCTGCCGGCAGCCAG
GGCGTGCGTCCAGTGCCGGTGTATTGGATTGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTCGTGGCGGACGAGTT
CGCGGCGGCATTGCTGGCGGATTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (68-129)

• SRP54-type protein, GTPase domain (SRP54) (150-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	56.563	90.395	0.511