Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   NYR19_RS03805 Genome accession   NZ_CP103874
Coordinates   795240..797624 (+) Length   794 a.a.
NCBI ID   WP_302508896.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 790240..802624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS03785 (NYR19_03785) - 791358..792224 (-) 867 WP_285092489.1 MFS transporter -
  NYR19_RS03790 (NYR19_03790) folK 792325..792807 (-) 483 WP_302508892.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NYR19_RS03795 (NYR19_03795) pcnB 792807..794315 (-) 1509 WP_039143289.1 polynucleotide adenylyltransferase PcnB -
  NYR19_RS03800 (NYR19_03800) dksA 794461..794910 (-) 450 WP_039134528.1 RNA polymerase-binding protein DksA -
  NYR19_RS03805 (NYR19_03805) rec2 795240..797624 (+) 2385 WP_302508896.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYR19_RS03810 (NYR19_03810) msbA 797697..799445 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  NYR19_RS03815 (NYR19_03815) lpxK 799466..800443 (+) 978 WP_302508898.1 tetraacyldisaccharide 4'-kinase -
  NYR19_RS03820 (NYR19_03820) - 800440..800637 (+) 198 WP_039080900.1 Trm112 family protein -
  NYR19_RS03825 (NYR19_03825) kdsB 800639..801415 (+) 777 WP_013745480.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 92031.33 Da        Isoelectric Point: 9.0215

>NTDB_id=625934 NYR19_RS03805 WP_302508896.1 795240..797624(+) (rec2) [Gallibacterium anatis strain TH22]
MERIAIACIVSCLVMMYLPFEWIFLTKFWGIFFAITSSLTVLLIRKKSQWSNVIIAIIFSCCWCLFLIQQLITQAQYLHT
LPKKQRAEILIEKVLHQRDYQTAIASLKFSHKDEKYRFYLSWQTPQQIAAGQSWQGEVTLKPLASRANFGGFQRQKWLYA
NHIVGYAVVKNAVFVADHPDLRERLLRHNLDLWQQQPQSELFLALGFGDKRFLSQETLQLFQQTGTAHLIAISGLHIGLV
MLLGVALARSVQYFLPAHRITPFLPLLFGGMCALLYSYLADFSIPTVRAIIALIFLLWLRFFRGYLNWWQCYVRCIAIFV
LLDPLILLSDSFWLSALAVLCLLIWNHLFPLSVCSVRGKKLHQFGKITYYILALIHLQIGLFLLFTPITLFFFSGFNFFN
LWINLWIVPIFSFVLIPLILFSILTFDYFHSWVLCQFIAQQCVEGLKVFKTGWHPVSELENLWISLIFLGLCLLWGMFCI
RYAKYQRTKTDEHHWLPTSTLFRLEVSALVERTDFQTILKIIGMILGIMLWQLGFYYYQQYRTLWMLEMLDVGQGMSILI
RQNGKGVLYDTAASWRGGSMAELEIIPYLQRQGIELEAIIISHDDNDHSGGAEMLLRYFPNATLITSSEKTYAGKTPEPC
YQGVQWRWRDLDWQVIAPYKVEKTAKNHQSCVMLINDGKYKVLLTGDLDKTAELQYLEHFPTIDILQVAHHGSRTSTSTT
FLQKTAPKIALISAGIGNQWHFPHQDIISRLRQFQVDTLVTATVGQIRLRFTKQGNIEVETARTLLQPWFKQLL

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=625934 NYR19_RS03805 WP_302508896.1 795240..797624(+) (rec2) [Gallibacterium anatis strain TH22]
GTGGAGCGAATTGCCATTGCTTGTATTGTCAGTTGTTTGGTGATGATGTATTTGCCGTTTGAATGGATTTTTTTAACTAA
ATTTTGGGGTATTTTTTTCGCTATTACTTCGTCACTGACCGTATTGTTAATAAGAAAGAAAAGTCAGTGGAGTAATGTGA
TTATTGCAATAATATTTTCGTGTTGTTGGTGTTTATTTTTGATCCAACAACTAATAACTCAAGCGCAATATTTGCATACA
TTGCCGAAGAAACAGCGTGCGGAAATTTTGATTGAAAAGGTTTTGCACCAACGCGATTATCAAACGGCAATTGCATCATT
GAAATTTTCACATAAAGATGAAAAGTATCGTTTTTATTTAAGTTGGCAAACACCCCAACAAATAGCTGCCGGACAGTCTT
GGCAAGGAGAGGTGACATTAAAACCTTTAGCATCAAGAGCTAATTTTGGTGGTTTTCAGCGTCAAAAATGGTTGTATGCA
AATCATATTGTTGGCTATGCTGTTGTGAAAAATGCAGTTTTTGTTGCAGATCATCCCGATTTGCGCGAGCGATTATTGCG
GCATAATTTGGATTTATGGCAACAGCAACCACAGTCAGAATTATTTCTTGCATTGGGATTTGGTGATAAGCGTTTTTTGA
GTCAGGAAACGTTACAACTGTTTCAACAAACCGGAACAGCGCATTTAATTGCGATTTCAGGCTTGCATATCGGTTTAGTA
ATGTTGTTGGGGGTGGCTTTAGCGCGTAGTGTGCAGTATTTCTTGCCGGCGCATCGGATTACGCCTTTTTTGCCGCTATT
ATTCGGTGGAATGTGTGCGTTGTTATACAGTTATTTAGCCGATTTTTCGATCCCGACTGTCCGGGCCATTATTGCATTGA
TCTTTCTATTGTGGCTAAGATTTTTTCGCGGTTATTTAAATTGGTGGCAATGTTATGTGCGTTGTATCGCGATTTTTGTG
CTATTGGATCCGCTTATTCTGTTAAGTGATAGCTTTTGGCTATCCGCATTGGCGGTGTTATGTTTATTGATATGGAATCA
TCTGTTTCCCTTATCTGTTTGCTCGGTGCGAGGAAAAAAACTCCATCAATTCGGTAAAATTACTTATTACATTTTGGCGC
TTATTCATCTACAAATAGGACTGTTTCTGCTATTTACACCAATTACACTCTTCTTTTTTTCCGGTTTTAACTTCTTTAAT
TTATGGATTAATTTATGGATTGTGCCGATTTTCAGTTTTGTACTCATTCCATTAATTTTGTTCTCCATTTTAACGTTTGA
TTACTTCCACAGTTGGGTGTTATGCCAGTTTATTGCACAACAATGTGTTGAGGGTTTAAAGGTATTTAAAACTGGCTGGC
ATCCTGTTTCAGAGCTGGAAAATCTCTGGATTAGCTTGATTTTTCTAGGCTTGTGTTTGCTTTGGGGAATGTTTTGTATT
CGCTATGCTAAATATCAACGAACTAAAACGGATGAGCATCATTGGTTGCCGACATCAACACTATTCCGTTTAGAGGTGTC
TGCTTTAGTTGAGCGTACCGATTTTCAAACTATTTTGAAAATAATAGGAATGATTTTAGGCATAATGCTATGGCAATTAG
GCTTCTATTATTATCAACAATATCGCACTTTATGGATGTTGGAAATGTTGGATGTAGGGCAGGGGATGTCGATATTGATC
CGGCAAAATGGCAAAGGCGTTTTGTATGATACAGCCGCTTCGTGGCGCGGTGGCAGTATGGCTGAATTGGAAATTATTCC
CTATTTGCAACGGCAAGGTATTGAATTGGAAGCGATTATTATTAGTCACGATGATAATGATCACAGCGGTGGTGCTGAGA
TGTTGCTTCGTTATTTTCCGAATGCCACATTGATCACTTCATCCGAAAAAACATATGCCGGAAAAACACCTGAACCCTGT
TATCAAGGCGTTCAATGGCGTTGGCGCGATTTAGATTGGCAAGTGATAGCGCCGTATAAAGTAGAAAAAACAGCGAAAAA
TCATCAATCTTGCGTGATGTTGATCAATGATGGCAAATATAAGGTCCTGTTAACCGGTGATCTGGATAAAACGGCGGAAT
TACAGTATTTAGAACATTTCCCGACGATTGATATTTTGCAGGTGGCGCATCACGGTAGCCGTACTTCGACCAGTACCACA
TTTTTGCAAAAAACAGCACCGAAGATAGCATTAATTTCTGCCGGTATAGGCAATCAATGGCATTTTCCGCATCAGGACAT
TATTTCACGATTACGGCAATTTCAAGTTGATACGCTGGTAACGGCAACCGTAGGACAGATTCGATTACGTTTTACCAAGC
AGGGCAATATTGAAGTTGAAACGGCAAGAACATTATTACAACCTTGGTTTAAGCAGTTACTTTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(205-480)

Metallo-beta-lactamase superfamily (Lactamase_B)

(551-735)

Domain of unknown function (DUF4131) (DUF4131)

(28-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.192

91.814

0.369