Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N288_RS03490 Genome accession   NC_022524
Coordinates   643158..643481 (-) Length   107 a.a.
NCBI ID   WP_009792142.1    Uniprot ID   A0A2N5FR62
Organism   Bacillus infantis NRRL B-14911     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 638158..648481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS03460 (N288_03645) - 638760..639380 (-) 621 WP_009792149.1 class D sortase -
  N288_RS03465 (N288_03650) - 639377..639724 (-) 348 WP_009792148.1 helix-turn-helix domain-containing protein -
  N288_RS03470 (N288_03655) sipW 639955..640590 (+) 636 WP_009792147.1 signal peptidase I SipW -
  N288_RS03475 (N288_03660) - 640673..641266 (+) 594 WP_009792146.1 CalY family protein -
  N288_RS03480 (N288_03665) - 641341..642243 (+) 903 WP_009792145.1 LPXTG cell wall anchor domain-containing protein -
  N288_RS03485 (N288_03670) - 642295..642492 (+) 198 WP_022543371.1 hypothetical protein -
  N288_RS24530 (N288_03675) - 642878..643018 (+) 141 WP_022543372.1 anti-repressor SinI family protein -
  N288_RS03490 (N288_03680) sinR 643158..643481 (-) 324 WP_009792142.1 helix-turn-helix domain-containing protein Regulator
  N288_RS03495 (N288_03685) - 643714..644097 (+) 384 WP_009792141.1 MerR family transcriptional regulator -
  N288_RS03500 (N288_03695) - 644094..645611 (+) 1518 Protein_650 class I adenylate-forming enzyme family protein -
  N288_RS03505 (N288_03700) - 645675..647297 (+) 1623 WP_050767261.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12521.37 Da        Isoelectric Point: 7.0191

>NTDB_id=62485 N288_RS03490 WP_009792142.1 643158..643481(-) (sinR) [Bacillus infantis NRRL B-14911]
MIGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKISAVLHVPVDTLILDQPNKEELDSEWMNIVK
EAMDSGISKDQFREFLEFNKWRINQKK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=62485 N288_RS03490 WP_009792142.1 643158..643481(-) (sinR) [Bacillus infantis NRRL B-14911]
ATGATTGGCGAACGTGTAAAAAGACTGCGTCAGGAGAGAAAGATGTCATTATCAGAGCTCGCTGAACAGGCAGGCGTAGC
AAAATCCTACCTAAGCTCCCTGGAAAGAAACCTTCAGACGAATCCTTCCATTCAATTTTTAGAAAAAATTTCTGCTGTTC
TTCATGTTCCGGTTGATACACTGATCCTGGACCAGCCTAATAAAGAAGAGCTGGATTCTGAATGGATGAATATCGTCAAA
GAAGCAATGGATTCCGGCATCTCAAAAGACCAGTTCCGTGAATTCCTCGAATTCAATAAATGGAGGATCAACCAAAAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5FR62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

65.138

100

0.664

Multiple sequence alignment