Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | N288_RS00585 | Genome accession | NC_022524 |
| Coordinates | 109202..111655 (+) | Length | 817 a.a. |
| NCBI ID | WP_009791537.1 | Uniprot ID | - |
| Organism | Bacillus infantis NRRL B-14911 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 104202..116655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N288_RS00570 (N288_00585) | - | 107073..107537 (+) | 465 | WP_263623464.1 | CtsR family transcriptional regulator | - |
| N288_RS00575 (N288_00590) | - | 107565..108113 (+) | 549 | WP_009791535.1 | UvrB/UvrC motif-containing protein | - |
| N288_RS00580 (N288_00595) | - | 108118..109185 (+) | 1068 | WP_009791536.1 | protein arginine kinase | - |
| N288_RS00585 (N288_00600) | clpC | 109202..111655 (+) | 2454 | WP_009791537.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| N288_RS00590 (N288_00605) | radA | 111880..113262 (+) | 1383 | WP_009791538.1 | DNA repair protein RadA | Machinery gene |
| N288_RS00595 (N288_00610) | disA | 113266..114339 (+) | 1074 | WP_009791539.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| N288_RS00600 (N288_00615) | - | 114550..115632 (+) | 1083 | WP_009791540.1 | PIN/TRAM domain-containing protein | - |
| N288_RS00605 (N288_00620) | ispD | 115654..116346 (+) | 693 | WP_009791541.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 817 a.a. Molecular weight: 90796.49 Da Isoelectric Point: 5.8598
>NTDB_id=62481 N288_RS00585 WP_009791537.1 109202..111655(+) (clpC) [Bacillus infantis NRRL B-14911]
MMFGRFTERAQKVLALAQEEAIRLGHSNIGTEHILLGLVREGEGIAAKALYALGLGSEKIQKEVENLIGRGQDSSQTPHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNDSGSHQGGSAASANT
PTLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPITVDEPTADESVQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELELKLEEVRKEKDAAVQSQEFEKAASLRDSEQRLREQLEETKKSWKEKQGKENSEVTVDDIAHVV
ASWTGIPVAKLAQTETAKLLNMEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKRNKYVGFNIQDGEQDYKDMKGKVMEELKKAFRPEFLNRIDEIIVFHALEKKHLK
EIVTLLSDQLVKRLQEQEIVLGLTDKAKEKISEEGYDPEYGARPLRRAIQKHIEDRLSEELLKGQVLTGQNVIIDVEDGE
FVVKTEESPETATNLSK
MMFGRFTERAQKVLALAQEEAIRLGHSNIGTEHILLGLVREGEGIAAKALYALGLGSEKIQKEVENLIGRGQDSSQTPHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNDSGSHQGGSAASANT
PTLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPITVDEPTADESVQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELELKLEEVRKEKDAAVQSQEFEKAASLRDSEQRLREQLEETKKSWKEKQGKENSEVTVDDIAHVV
ASWTGIPVAKLAQTETAKLLNMEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKRNKYVGFNIQDGEQDYKDMKGKVMEELKKAFRPEFLNRIDEIIVFHALEKKHLK
EIVTLLSDQLVKRLQEQEIVLGLTDKAKEKISEEGYDPEYGARPLRRAIQKHIEDRLSEELLKGQVLTGQNVIIDVEDGE
FVVKTEESPETATNLSK
Nucleotide
Download Length: 2454 bp
>NTDB_id=62481 N288_RS00585 WP_009791537.1 109202..111655(+) (clpC) [Bacillus infantis NRRL B-14911]
ATGATGTTCGGACGATTTACTGAAAGAGCTCAAAAAGTATTGGCATTAGCACAGGAGGAAGCCATTCGCTTAGGACACAG
CAATATCGGCACAGAGCATATCCTGCTCGGCCTCGTCCGTGAAGGAGAAGGGATTGCTGCAAAGGCGCTTTATGCACTCG
GACTGGGCTCTGAAAAGATCCAAAAAGAGGTGGAAAACCTTATTGGCCGCGGCCAGGATTCCTCACAGACTCCCCACTAT
ACACCAAGGGCTAAAAAGGTCATTGAGCTCTCAATGGATGAGGCCAGAAAACTGGGCCACTCTTATGTTGGCACAGAGCA
TATCCTGCTCGGCTTGATCCGTGAGGGTGAGGGTGTTGCCGCACGGGTGCTGAACAATCTGGGAGTCAGCTTGAATAAAG
CAAGGCAGCAGGTGCTCCAGCTTCTGGGCAGCAATGATTCAGGAAGCCATCAGGGAGGATCAGCAGCAAGCGCTAATACA
CCGACCCTTGATAGCCTTGCAAGAGACCTGACAGCCATTGCCAGGGAAGGAAGCCTTGATCCGGTCATCGGCCGAAGCAA
GGAAATCCAGCGCGTCATTGAAGTGCTGAGCCGCCGGACAAAGAACAATCCGGTCCTGATCGGGGAGCCTGGCGTCGGTA
AGACAGCCATCGCAGAAGGACTTGCACAGCAGATCATCAACAATGAAGTGCCGGAGATCCTCCGCGACAAAAGGGTTATG
ACACTGGATATGGGGACAGTTGTTGCCGGAACAAAATACCGTGGCGAATTCGAAGACCGCTTGAAAAAAGTAATGGATGA
AATCCGCCAGGCTGGCAATATCATTCTCTTCATCGATGAGCTTCATACTTTGATTGGTGCAGGAGGAGCAGAGGGGGCAA
TCGATGCTTCCAATATCCTGAAGCCATCCCTTGCAAGGGGCGAACTGCAGTGCATCGGCGCCACTACCCTGGATGAATAC
AGAAAGTATATCGAAAAGGATGCTGCGCTTGAAAGGCGTTTCCAGCCGATCACGGTAGATGAACCGACAGCAGATGAGTC
TGTTCAGATCCTTAAGGGGCTGCGCGACCGCTATGAGGCCCATCACAGAGTATCCATCACAGATGAAGCCATCGAGGCAG
CTGTTAAGCTTTCTGATCGTTATATCTCAGACCGCTTCCTTCCGGATAAGGCGATCGATCTGATTGATGAAGCAGGTTCA
AAAGTACGCCTGCGTTCTTACACTACTCCCCCTAACCTGAAAGAGCTTGAATTGAAGCTTGAAGAAGTCAGGAAGGAAAA
AGATGCTGCCGTCCAAAGCCAGGAGTTCGAGAAAGCTGCATCCCTCAGAGACTCTGAACAGCGCCTGCGCGAGCAGCTGG
AGGAAACAAAGAAGAGCTGGAAAGAGAAGCAGGGGAAGGAAAACAGCGAAGTCACAGTTGATGATATTGCACATGTAGTA
GCAAGCTGGACTGGAATTCCTGTAGCGAAGCTGGCTCAGACAGAAACAGCCAAGCTCCTGAACATGGAAGAAATTCTTCA
TTCCCGTGTCATTGGCCAGGAAGAAGCGGTCAAGGCGATCTCCAAAGCGGTCCGCCGTGCGCGTGCCGGGCTGAAAGATC
CTAAGCGCCCAATCGGCTCCTTCGTATTCCTCGGCCCTACTGGGGTCGGTAAGACTGAGCTTGCGCGTGCGCTTGCAGAG
GCGATGTTCGGCGATGAAGATGCAATGATCCGCATCGATATGTCTGAATATATGGAGAAGCATTCAACTTCCCGTCTTGT
TGGTTCACCTCCGGGATATGTAGGATATGAGGAAGGCGGCCAGCTGACAGAAAAAGTCCGCAGGAAGCCATACTCAGTTG
TCCTTCTGGATGAGATTGAGAAAGCACATCCGGATGTATTCAATATCCTCCTTCAGGTTCTTGAGGATGGACGCCTGACA
GATTCTAAAGGCCGGACTGTCGACTTCCGAAACACAGTCCTGATCATGACATCCAATGTCGGGGCAGAAGCGCTGAAACG
CAATAAATATGTCGGCTTTAACATCCAGGATGGAGAGCAGGACTATAAGGATATGAAAGGCAAGGTAATGGAAGAGCTTA
AGAAGGCTTTCCGCCCTGAATTCCTTAACCGGATCGATGAAATCATCGTGTTCCACGCCCTTGAGAAAAAACATCTCAAG
GAAATCGTTACATTGCTTTCCGATCAATTGGTTAAACGCCTGCAGGAACAGGAAATTGTCCTTGGCCTGACCGATAAGGC
AAAAGAGAAAATTTCCGAGGAAGGGTACGACCCTGAGTATGGTGCAAGGCCGCTCCGCCGCGCGATCCAAAAGCATATCG
AGGACCGTTTGTCAGAGGAGCTGCTGAAGGGCCAGGTGCTGACAGGGCAGAATGTCATTATCGATGTAGAAGATGGGGAA
TTTGTCGTGAAAACAGAAGAATCTCCTGAAACTGCAACAAACTTATCTAAATAA
ATGATGTTCGGACGATTTACTGAAAGAGCTCAAAAAGTATTGGCATTAGCACAGGAGGAAGCCATTCGCTTAGGACACAG
CAATATCGGCACAGAGCATATCCTGCTCGGCCTCGTCCGTGAAGGAGAAGGGATTGCTGCAAAGGCGCTTTATGCACTCG
GACTGGGCTCTGAAAAGATCCAAAAAGAGGTGGAAAACCTTATTGGCCGCGGCCAGGATTCCTCACAGACTCCCCACTAT
ACACCAAGGGCTAAAAAGGTCATTGAGCTCTCAATGGATGAGGCCAGAAAACTGGGCCACTCTTATGTTGGCACAGAGCA
TATCCTGCTCGGCTTGATCCGTGAGGGTGAGGGTGTTGCCGCACGGGTGCTGAACAATCTGGGAGTCAGCTTGAATAAAG
CAAGGCAGCAGGTGCTCCAGCTTCTGGGCAGCAATGATTCAGGAAGCCATCAGGGAGGATCAGCAGCAAGCGCTAATACA
CCGACCCTTGATAGCCTTGCAAGAGACCTGACAGCCATTGCCAGGGAAGGAAGCCTTGATCCGGTCATCGGCCGAAGCAA
GGAAATCCAGCGCGTCATTGAAGTGCTGAGCCGCCGGACAAAGAACAATCCGGTCCTGATCGGGGAGCCTGGCGTCGGTA
AGACAGCCATCGCAGAAGGACTTGCACAGCAGATCATCAACAATGAAGTGCCGGAGATCCTCCGCGACAAAAGGGTTATG
ACACTGGATATGGGGACAGTTGTTGCCGGAACAAAATACCGTGGCGAATTCGAAGACCGCTTGAAAAAAGTAATGGATGA
AATCCGCCAGGCTGGCAATATCATTCTCTTCATCGATGAGCTTCATACTTTGATTGGTGCAGGAGGAGCAGAGGGGGCAA
TCGATGCTTCCAATATCCTGAAGCCATCCCTTGCAAGGGGCGAACTGCAGTGCATCGGCGCCACTACCCTGGATGAATAC
AGAAAGTATATCGAAAAGGATGCTGCGCTTGAAAGGCGTTTCCAGCCGATCACGGTAGATGAACCGACAGCAGATGAGTC
TGTTCAGATCCTTAAGGGGCTGCGCGACCGCTATGAGGCCCATCACAGAGTATCCATCACAGATGAAGCCATCGAGGCAG
CTGTTAAGCTTTCTGATCGTTATATCTCAGACCGCTTCCTTCCGGATAAGGCGATCGATCTGATTGATGAAGCAGGTTCA
AAAGTACGCCTGCGTTCTTACACTACTCCCCCTAACCTGAAAGAGCTTGAATTGAAGCTTGAAGAAGTCAGGAAGGAAAA
AGATGCTGCCGTCCAAAGCCAGGAGTTCGAGAAAGCTGCATCCCTCAGAGACTCTGAACAGCGCCTGCGCGAGCAGCTGG
AGGAAACAAAGAAGAGCTGGAAAGAGAAGCAGGGGAAGGAAAACAGCGAAGTCACAGTTGATGATATTGCACATGTAGTA
GCAAGCTGGACTGGAATTCCTGTAGCGAAGCTGGCTCAGACAGAAACAGCCAAGCTCCTGAACATGGAAGAAATTCTTCA
TTCCCGTGTCATTGGCCAGGAAGAAGCGGTCAAGGCGATCTCCAAAGCGGTCCGCCGTGCGCGTGCCGGGCTGAAAGATC
CTAAGCGCCCAATCGGCTCCTTCGTATTCCTCGGCCCTACTGGGGTCGGTAAGACTGAGCTTGCGCGTGCGCTTGCAGAG
GCGATGTTCGGCGATGAAGATGCAATGATCCGCATCGATATGTCTGAATATATGGAGAAGCATTCAACTTCCCGTCTTGT
TGGTTCACCTCCGGGATATGTAGGATATGAGGAAGGCGGCCAGCTGACAGAAAAAGTCCGCAGGAAGCCATACTCAGTTG
TCCTTCTGGATGAGATTGAGAAAGCACATCCGGATGTATTCAATATCCTCCTTCAGGTTCTTGAGGATGGACGCCTGACA
GATTCTAAAGGCCGGACTGTCGACTTCCGAAACACAGTCCTGATCATGACATCCAATGTCGGGGCAGAAGCGCTGAAACG
CAATAAATATGTCGGCTTTAACATCCAGGATGGAGAGCAGGACTATAAGGATATGAAAGGCAAGGTAATGGAAGAGCTTA
AGAAGGCTTTCCGCCCTGAATTCCTTAACCGGATCGATGAAATCATCGTGTTCCACGCCCTTGAGAAAAAACATCTCAAG
GAAATCGTTACATTGCTTTCCGATCAATTGGTTAAACGCCTGCAGGAACAGGAAATTGTCCTTGGCCTGACCGATAAGGC
AAAAGAGAAAATTTCCGAGGAAGGGTACGACCCTGAGTATGGTGCAAGGCCGCTCCGCCGCGCGATCCAAAAGCATATCG
AGGACCGTTTGTCAGAGGAGCTGCTGAAGGGCCAGGTGCTGACAGGGCAGAATGTCATTATCGATGTAGAAGATGGGGAA
TTTGTCGTGAAAACAGAAGAATCTCCTGAAACTGCAACAAACTTATCTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
89.068 |
98.531 |
0.878 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.501 |
98.164 |
0.486 |
| clpC | Streptococcus thermophilus LMD-9 |
47.521 |
100 |
0.481 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.152 |
100 |
0.476 |
| clpC | Streptococcus mutans UA159 |
45.278 |
100 |
0.458 |
| clpC | Streptococcus pneumoniae D39 |
45.983 |
99.021 |
0.455 |
| clpC | Streptococcus pneumoniae Rx1 |
45.983 |
99.021 |
0.455 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.859 |
99.021 |
0.454 |
| clpE | Streptococcus mutans UA159 |
54.434 |
80.049 |
0.436 |
| clpE | Streptococcus pneumoniae TIGR4 |
54.56 |
77.846 |
0.425 |
| clpE | Streptococcus pneumoniae Rx1 |
54.317 |
77.968 |
0.423 |
| clpE | Streptococcus pneumoniae D39 |
54.317 |
77.968 |
0.423 |
| clpE | Streptococcus pneumoniae R6 |
54.317 |
77.968 |
0.423 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.914 |
79.927 |
0.415 |