Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LMD38_RS04955 Genome accession   NZ_CP086328
Coordinates   954086..956425 (+) Length   779 a.a.
NCBI ID   WP_061184102.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949086..961425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS04940 (LMD38_04940) - 949965..950249 (+) 285 WP_000886980.1 post-transcriptional regulator -
  LMD38_RS04945 (LMD38_04945) secDF 950520..952784 (+) 2265 WP_016718528.1 protein translocase subunit SecDF -
  LMD38_RS04950 (LMD38_04950) - 953091..953984 (+) 894 WP_062821304.1 cation diffusion facilitator family transporter -
  LMD38_RS04955 (LMD38_04955) recJ 954086..956425 (+) 2340 WP_061184102.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LMD38_RS04960 (LMD38_04960) - 956473..956985 (+) 513 WP_000346219.1 adenine phosphoribosyltransferase -
  LMD38_RS04965 (LMD38_04965) relA 957196..959379 (+) 2184 WP_001262814.1 GTP diphosphokinase -
  LMD38_RS04970 (LMD38_04970) - 959397..959837 (+) 441 WP_001266956.1 D-tyrosyl-tRNA(Tyr) deacylase -
  LMD38_RS04975 (LMD38_04975) - 959968..960663 (+) 696 WP_061184101.1 alpha/beta fold hydrolase -
  LMD38_RS04980 (LMD38_04980) - 960663..960812 (+) 150 WP_000271075.1 hypothetical protein -
  LMD38_RS04985 (LMD38_04985) - 960927..961103 (+) 177 WP_001242605.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88032.56 Da        Isoelectric Point: 4.8975

>NTDB_id=624296 LMD38_RS04955 WP_061184102.1 954086..956425(+) (recJ) [Bacillus pacificus strain anQ-h4]
MLQPKTRWKEKEYNSERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVAELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKGKITMVYFSEEVLNKFSLEDYKEHMMHASEVTELDDQYIVLLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKSPFSLRQYGEQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=624296 LMD38_RS04955 WP_061184102.1 954086..956425(+) (recJ) [Bacillus pacificus strain anQ-h4]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATAGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCGTTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACAACTGTTTTATATATTGCCTTACAAGAATT
AGGTGCAGACGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGTTATGGACCGAATGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTTTCACTCATTATTACTGTCGATACTGGTATCGCAGCTGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGGATAGATCTAATTATTACAGATCACCATGAGCCACCACCAGAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTGTATCCGTTTCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCACTACTGGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACGGTAGCCGATTTAGTATCACTTCACGGTGAGAATAGATTGCTA
GTGAAGCGTGGTTTAAAGCATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGCTTCTCAATCGCGCCTCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCCGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAACGAATTTCCCGCCTGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACTGCAAAAGGTTCAGCGCGTAGTATTGCAGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGCTGAATTACGCCGCCGTTTAAATGAACAGGCAGATACAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTCGATGCTTTTTGCAAAGTGGAGGACGTAACACTTGCAGCAATTGAAGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGCAATCCAAAGCCACGTATTGCAGTGAAAGATGCGGAGCTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCTCATTT
AAAGATGTCTCTTCGTGATGGACAAGCAACATTGGATACAATTGGATTCGGTTTTGGTGCGTACGCGAAAGAAATTTCTC
CAGTTGCAAAAGTATCTGTAATAGGAGAAGCGTCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTCGATTGGCGTAGTATGCGTAACGTAGAAGCAAATTTAGCAGAACTTCCGAA
AGGGAAAATCACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTGACCGAGTTAGATGATCAATACATCGTATTACTTGATTTACCAAAAGGGACAGATGAATTAAGAGAG
CTATTTAAAGTAGGATTCCCGTCGCGAATTTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACATTTTAAATGGTACTATTCGTTCTTGAGCCAAAAATCACCATTTTCTTTAAGACAATATGGAGAACAACTAT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526