Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HP399_RS18935 Genome accession   NZ_CP085876
Coordinates   4161288..4163012 (-) Length   574 a.a.
NCBI ID   WP_007720789.1    Uniprot ID   J3ABC2
Organism   Brevibacillus sp. DP1.3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4156288..4168012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS18910 (HP399_018930) - 4156467..4156895 (+) 429 WP_173620198.1 hypothetical protein -
  HP399_RS18915 (HP399_018935) - 4157005..4157376 (-) 372 WP_228088288.1 hypothetical protein -
  HP399_RS18920 (HP399_018940) - 4157392..4157670 (-) 279 WP_228088289.1 hypothetical protein -
  HP399_RS18925 (HP399_018945) spo0A 4158664..4159452 (-) 789 WP_007720793.1 sporulation transcription factor Spo0A -
  HP399_RS18930 (HP399_018950) spoIVB 4159711..4161045 (-) 1335 WP_173620199.1 SpoIVB peptidase -
  HP399_RS18935 (HP399_018955) recN 4161288..4163012 (-) 1725 WP_007720789.1 DNA repair protein RecN Machinery gene
  HP399_RS18940 (HP399_018960) ahrC 4163029..4163478 (-) 450 WP_007720787.1 transcriptional regulator AhrC/ArgR -
  HP399_RS18945 (HP399_018965) - 4163484..4164341 (-) 858 WP_173620200.1 NAD(+)/NADH kinase -
  HP399_RS18950 (HP399_018970) - 4164470..4165288 (-) 819 WP_173620201.1 TlyA family RNA methyltransferase -
  HP399_RS18955 (HP399_018975) dxs 4165285..4167171 (-) 1887 WP_173620202.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64674.51 Da        Isoelectric Point: 4.7198

>NTDB_id=621068 HP399_RS18935 WP_007720789.1 4161288..4163012(-) (recN) [Brevibacillus sp. DP1.3A]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLDVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGSAK
QEYGTLYATYRKTKQDLERMARNDRELVQRMDLLQYQLDEIEAATLTPGEDEKLLQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILETVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQEFAADLAVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVR
QTPDDDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDERVSELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=621068 HP399_RS18935 WP_007720789.1 4161288..4163012(-) (recN) [Brevibacillus sp. DP1.3A]
ATGCTAGTGGAACTCTCGATCCGAAATTTTGCCATCATCAAATCAGTGACGGTCTCTTTCCAAAAAGGCTTAAACATCCT
GACAGGGGAGACTGGTGCTGGTAAATCCATCATTATCGATGCGCTTGGACTGCTATTAGGAGGCCGGGCTTCGGCTGATT
TTGTTCGTTACGGTGAGCCTCGTGCAGAAGTGGAAGGGCTATTTGAATTGCCGCCTGGTCATCCTGGACTTGACGTTTGT
AAGAATGTCGGTGTCCAGATTGAGCAAGACGGAATGCTCGTGGTACGCCGAGATATATCGAATCAAGGGAAGAGCATTAT
TCGAATCAACGGCCAGCTCGTGACTCTCGCTATGCTGCGTGAGTTAGGGCCATGGCTGGTTACGGTGCATGGTCAACACG
ATACGCATATGCTGATGCAGTCAGACAAGCATATCAATTGGCTCGATGCATATGGGGAAAGTGCATTGGGATCTGCGAAG
CAAGAGTACGGCACCCTGTATGCTACTTACCGCAAAACAAAGCAAGATCTGGAGCGTATGGCACGTAATGATCGTGAGCT
GGTACAGCGTATGGATCTATTGCAATATCAGCTCGATGAAATTGAGGCGGCAACCCTCACGCCTGGTGAAGACGAGAAGC
TCTTGCAGCAGCGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATATCGCGCCTTGCATGGT
GACCAAAAGGGCATGGATTGGTTAGGACATGCGATGGGAGAGCTCGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAGACGGTCCAATCGGCATACTATCAGATAGAAGATGTGGTACATAACCTTCGTCAATTGTCGTATCAAATGG
ATTTTGAACCGGAGCAGTTGGCAGAAGTAGAACGCCGTCTTGATCAGATTCAGTCGTTAAAACGCAAGTATGGCAAAAGT
GTAGACGACATTTTGGAGTACGCTGCCACGATTCAGGATGAATTGGATGATATGCATCACTACGAAGACCGCCTCCAGCA
GGTGGAAAAGCAATTGCAGGAGTTTGCAGCCGATTTGGCAGTGGAGGCATTGGAGTTGTCGGTCATTCGTTCCGAATGCG
CAGGGAAACTCGCACAAGAAATCGAGCAGCAGCTAAAAGAACTGCACATGGAGCGTGCTCGTTTTGCCATTGATGTCAGA
CAGACGCCGGATGATGACGGGGTAGAAATTGACGGAATCAAGCGATTTGTAGATGCAAACGGAATGGATCAGATCGAGTT
TTTAATCTCACCTAACCCGGGTGAGCCATTGCGTCCCTTGGCGAAGATTGCTTCCGGCGGGGAGCTGTCTCGCGTCATGC
TGGCCATTAAAACAATTTTGGCGGGTACTGATCAAGTGGAGACCCTTATTTTTGATGAAGTCGACACGGGAGTAAGCGGA
AGAGCCGCTCAAGCGATTGCAGAAAAGCTCGCCCGAGTCGCTGGGCAGCGCCAAGTCCTGTGCATTACGCACTTGCCACA
GGTAGCATCCATGGCAGACGCGCATTTTCTGATCAAAAAGGAAATGAGCGAGAATGAAACAGAGACGCGGGTGAATCGTT
TGTCTGATGATGAACGGGTATCAGAGCTGGCTCGTATGCTAAGCGGGGCAGAGGTAACAGCAAAAACAGAAGAACATGCG
CGAGAGATGATCCTTCTCGGCCGTGAACGAAAGACTGTCAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3ABC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.438

100

0.486