Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SIR_RS17355 Genome accession   NC_022246
Coordinates   1567900..1569660 (-) Length   586 a.a.
NCBI ID   WP_021003160.1    Uniprot ID   T1ZFX7
Organism   Streptococcus intermedius B196     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562900..1574660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17335 (SIR_1493) - 1563686..1564411 (-) 726 WP_003076141.1 GntR family transcriptional regulator -
  SIR_RS17340 (SIR_1494) celB 1564445..1565713 (-) 1269 WP_020999086.1 PTS cellobiose transporter subunit IIC -
  SIR_RS17345 (SIR_1495) - 1565856..1567253 (+) 1398 WP_021003159.1 glycoside hydrolase family 1 protein -
  SIR_RS17350 (SIR_1496) - 1567402..1567815 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SIR_RS17355 (SIR_1497) rcrQ 1567900..1569660 (-) 1761 WP_021003160.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17360 (SIR_1498) rcrP 1569650..1571416 (-) 1767 WP_021003161.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17365 (SIR_1499) - 1571409..1571867 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator -
  SIR_RS17370 (SIR_1500) - 1572039..1573226 (-) 1188 WP_020999091.1 NADH-dependent flavin oxidoreductase -
  SIR_RS17375 (SIR_1501) - 1573493..1573903 (-) 411 WP_021003162.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65196.41 Da        Isoelectric Point: 6.5145

>NTDB_id=61899 SIR_RS17355 WP_021003160.1 1567900..1569660(-) (rcrQ) [Streptococcus intermedius B196]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGVILSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYAVGTV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTKLYNS
MWKSQFISGIMMPLMIFTGNLGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTTLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=61899 SIR_RS17355 WP_021003160.1 1567900..1569660(-) (rcrQ) [Streptococcus intermedius B196]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCATTGCTCGTTGCGTT
TGTGGGAGTAATACTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTTATCACAGAAG
GAATGAGAAGTCGAATTGATCTGAAGGCAATCTCTAATATTGCTCTTTTCTTAGCCGTTTTATATGCGGTGGGTACTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGTGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAAGCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACCTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACCACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACTGGTGCTGGAAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAAGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCGTCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZFX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.478

99.317

0.71

Multiple sequence alignment