Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW967_RS03695 Genome accession   NZ_CP102952
Coordinates   777934..779016 (+) Length   360 a.a.
NCBI ID   WP_258411579.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 39-B-49     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772934..784016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW967_RS03675 (NW967_03675) - 773311..774381 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW967_RS03680 (NW967_03680) - 774699..775754 (+) 1056 WP_258411577.1 MraY family glycosyltransferase -
  NW967_RS03685 (NW967_03685) - 775919..776560 (-) 642 WP_258411578.1 YigZ family protein -
  NW967_RS03690 (NW967_03690) fakB1 776704..777570 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  NW967_RS03695 (NW967_03695) comFA 777934..779016 (+) 1083 WP_258411579.1 DEAD/DEAH box helicase Machinery gene
  NW967_RS03700 (NW967_03700) - 779009..779683 (+) 675 WP_258411580.1 ComF family protein -
  NW967_RS03705 (NW967_03705) raiA 779744..780316 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW967_RS03710 (NW967_03710) secA 780730..783261 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW967_RS03715 (NW967_03715) - 783303..783401 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42065.53 Da        Isoelectric Point: 9.6864

>NTDB_id=618976 NW967_RS03695 WP_258411579.1 777934..779016(+) (comFA) [Staphylococcus aureus strain 39-B-49]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=618976 NW967_RS03695 WP_258411579.1 777934..779016(+) (comFA) [Staphylococcus aureus strain 39-B-49]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364