Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIS81_RS06600 Genome accession   NZ_CP085399
Coordinates   1278515..1278838 (-) Length   107 a.a.
NCBI ID   WP_226640047.1    Uniprot ID   -
Organism   Bacillus tropicus strain CK18     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273515..1283838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS06575 (LIS81_06585) - 1273681..1274967 (+) 1287 WP_000247010.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LIS81_RS06580 (LIS81_06590) sipW 1275160..1275729 (+) 570 WP_001973051.1 signal peptidase I SipW -
  LIS81_RS06585 (LIS81_06595) - 1275792..1276379 (+) 588 WP_000172849.1 CalY family protein -
  LIS81_RS06590 (LIS81_06600) - 1276541..1277413 (+) 873 WP_252211035.1 DUF4047 domain-containing protein -
  LIS81_RS06595 (LIS81_06605) calY 1277845..1278438 (+) 594 WP_000053729.1 biofilm matrix protein CalY -
  LIS81_RS06600 (LIS81_06610) sinR 1278515..1278838 (-) 324 WP_226640047.1 helix-turn-helix domain-containing protein Regulator
  LIS81_RS06605 (LIS81_06615) - 1278918..1279052 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  LIS81_RS06610 (LIS81_06620) inhA1 1279396..1281783 (+) 2388 WP_226640048.1 M6 family metalloprotease immune inhibitor InhA1 -
  LIS81_RS06615 (LIS81_06625) - 1281956..1283323 (+) 1368 WP_226640049.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12372.19 Da        Isoelectric Point: 8.5614

>NTDB_id=617720 LIS81_RS06600 WP_226640047.1 1278515..1278838(-) (sinR) [Bacillus tropicus strain CK18]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAGVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=617720 LIS81_RS06600 WP_226640047.1 1278515..1278838(-) (sinR) [Bacillus tropicus strain CK18]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGGAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682