Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT27_RS20875 Genome accession   NZ_CP085392
Coordinates   4060099..4061781 (-) Length   560 a.a.
NCBI ID   WP_019380198.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain CK22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4055099..4066781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS20855 (LIT27_20895) - 4056942..4057178 (+) 237 WP_019380202.1 DUF2627 domain-containing protein -
  LIT27_RS20860 (LIT27_20900) - 4057198..4057338 (+) 141 WP_009332885.1 YycC family protein -
  LIT27_RS20865 (LIT27_20905) spo0A 4057471..4058259 (-) 789 WP_019380201.1 sporulation transcription factor Spo0A -
  LIT27_RS20870 (LIT27_20910) spoIVB 4058627..4059916 (-) 1290 WP_019380200.1 SpoIVB peptidase -
  LIT27_RS20875 (LIT27_20915) recN 4060099..4061781 (-) 1683 WP_019380198.1 DNA repair protein RecN Machinery gene
  LIT27_RS20880 (LIT27_20920) argR 4062256..4062705 (-) 450 WP_252245281.1 transcriptional regulator ArgR -
  LIT27_RS20885 (LIT27_20925) - 4062974..4063816 (-) 843 WP_009332890.1 TlyA family RNA methyltransferase -
  LIT27_RS20890 (LIT27_20930) dxs 4063820..4065712 (-) 1893 WP_252245282.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63303.38 Da        Isoelectric Point: 5.1594

>NTDB_id=617465 LIT27_RS20875 WP_019380198.1 4060099..4061781(-) (recN) [Cytobacillus oceanisediminis strain CK22]
MLNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAEIEGLFILDDLKHPCYKR
SAEFGIEIEDGMIVLRRDISKTGKSVCRVNGKLVTISVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKLSAAL
TEYQDIYRLYENTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSLQSGYNALQG
EQKGLDWIGMVMGYMNDAAELDPAYKEIAENVANSFYLLEDAARSLRNEMDFMEYDPQRLNEIESRLNEINGLKRKYGKT
VEEVLEYSAQIEEEIETLLNKETHIDKLQKEVAALKKDLLVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDSEVFLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAMADTHLFIAKNTKDGRTKTTVKPLTEDEKIKEIGRMISGVEITDLTKEHAKELLHLANQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=617465 LIT27_RS20875 WP_019380198.1 4060099..4061781(-) (recN) [Cytobacillus oceanisediminis strain CK22]
TTGTTAAACGAAATATCCATACGAAATTTTGCCATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCGGGAAAGTCCATCATTATCGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAAT
TTGTCCGCCATGGTGAGGATAAGGCTGAAATTGAGGGGCTTTTTATCCTGGATGATCTTAAACATCCTTGCTATAAACGG
TCTGCTGAATTTGGGATAGAGATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCGTCTG
CAGAGTGAACGGAAAACTTGTCACTATATCTGTATTGAGAGAAATCGGAAGTTCCCTTATTGATATACATGGCCAGCACG
AACATCAGGAATTAATGGATGAAACCTTTCATCTTCCTCTCCTCGATCAGTTTGGGGGATCCAAATTATCCGCTGCTTTA
ACTGAATACCAGGATATCTACAGGTTATATGAAAACACACTGAAAAAGCTTAAAAATTTAAGTGAGAATGAACAGCAAAT
GGCGCACCGGCTTGATTTAATTCAATTTCAGCTGGATGAAATTCAATCTGCTCAGCTTAAATTGAACGAAGATGAAGATT
TGATTGAAGAAAAAAGAAAGCTTTCCAATTTTGAACGTATTTTTGATTCTCTTCAGTCAGGCTATAATGCTCTTCAAGGA
GAACAAAAAGGGCTTGATTGGATCGGAATGGTTATGGGCTATATGAATGATGCCGCGGAACTGGACCCCGCCTATAAAGA
AATAGCGGAAAATGTGGCAAACAGTTTTTATTTGCTTGAAGATGCAGCGAGATCACTCCGCAATGAAATGGACTTTATGG
AATATGATCCCCAAAGACTTAATGAGATAGAAAGCAGATTGAATGAAATTAATGGGTTGAAAAGAAAATATGGAAAAACG
GTTGAAGAAGTGCTGGAATACTCTGCACAGATAGAAGAAGAAATTGAAACCCTGCTAAATAAAGAAACCCATATTGATAA
GCTGCAAAAGGAAGTTGCTGCCCTGAAAAAAGACCTTCTGGTTGAAGGAGAAGAATTGAGCAAGCTGCGCAGAAAATCTG
CCCTTAAACTTACCAAGTTAATTCACAAAGAGCTTAAGGAATTATATATGGAAAAGACAGTCTTTGAGGTCAGATTCTTT
TCTGATTCCGAAGTCTTCCTGAAAAACGGAATTGACAGGGCTGAGTTCTACATTTCCACCAATCCGGGAGAACCGCTTAA
GCCGCTGTCTAAAATTGCATCAGGCGGTGAATTGTCCCGAATCATGCTTGCTTTAAAGAGCATATTTTCAAAGCATCAGG
GTGTCACAAGTATTATTTTCGATGAGGTGGATACAGGCGTGAGCGGCAGGGTTGCACAAGCCATCGCGGAAAAGATTCAT
CACGTTTCCGTGGATTCACAGGTTCTGTGCATCTCTCATCTTCCTCAGGTTGCGGCCATGGCAGATACTCATTTATTTAT
TGCTAAAAACACAAAGGATGGGCGGACAAAAACAACAGTAAAACCGCTCACTGAAGATGAGAAAATCAAAGAAATCGGCC
GTATGATTTCCGGGGTGGAAATTACTGATTTAACAAAAGAGCATGCGAAAGAGCTGCTGCACCTGGCTAATCAGCTAAAG
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.892

100

0.645