Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NUU05_RS09250 Genome accession   NZ_CP102538
Coordinates   1767047..1767643 (+) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain TH-4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762047..1772643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS09225 (NUU05_09190) - 1762449..1764311 (-) 1863 WP_011680704.1 cell division site-positioning protein MapZ family protein -
  NUU05_RS09230 (NUU05_09195) - 1764314..1765480 (-) 1167 WP_011680703.1 class I SAM-dependent RNA methyltransferase -
  NUU05_RS09240 (NUU05_09205) gpsB 1766014..1766346 (-) 333 WP_011680702.1 cell division regulator GpsB -
  NUU05_RS09245 (NUU05_09210) - 1766455..1766970 (-) 516 WP_002949411.1 DUF1273 domain-containing protein -
  NUU05_RS09250 (NUU05_09215) recU 1767047..1767643 (+) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  NUU05_RS09255 (NUU05_09220) pbp1a 1767643..1769964 (+) 2322 WP_011680701.1 penicillin-binding protein PBP1A -
  NUU05_RS09260 (NUU05_09225) pepC 1770074..1771411 (-) 1338 WP_011680700.1 aminopeptidase C -
  NUU05_RS09265 (NUU05_09230) - 1771513..1771953 (-) 441 WP_011680699.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=617162 NUU05_RS09250 WP_002949408.1 1767047..1767643(+) (recU) [Streptococcus thermophilus strain TH-4]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=617162 NUU05_RS09250 WP_002949408.1 1767047..1767643(+) (recU) [Streptococcus thermophilus strain TH-4]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51