Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LG307_RS06870 Genome accession   NZ_CP085237
Coordinates   1297834..1298022 (+) Length   62 a.a.
NCBI ID   WP_404449267.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ADH2-198     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292834..1303022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG307_RS06845 (LG307_06790) - 1294547..1294729 (-) 183 WP_404449261.1 YjzD family protein -
  LG307_RS06850 (LG307_06795) - 1294843..1294980 (+) 138 WP_404449263.1 hypothetical protein -
  LG307_RS06855 (LG307_06800) - 1295124..1295864 (+) 741 WP_404449264.1 hypothetical protein -
  LG307_RS06860 (LG307_06805) - 1295956..1296726 (+) 771 WP_404449265.1 hypothetical protein -
  LG307_RS06865 (LG307_06810) med 1296868..1297818 (+) 951 WP_404449266.1 BMP family ABC transporter substrate-binding protein Regulator
  LG307_RS06870 (LG307_06815) comZ 1297834..1298022 (+) 189 WP_404449267.1 ComZ family protein Regulator
  LG307_RS06875 (LG307_06820) - 1298079..1298321 (-) 243 WP_404449268.1 hypothetical protein -
  LG307_RS06880 (LG307_06825) - 1298696..1299628 (+) 933 WP_404449269.1 beta-ketoacyl-ACP synthase III -
  LG307_RS06885 (LG307_06830) fabF 1299677..1300915 (+) 1239 WP_404450401.1 beta-ketoacyl-ACP synthase II -
  LG307_RS06890 (LG307_06835) - 1301257..1302039 (+) 783 WP_404449271.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7201.36 Da        Isoelectric Point: 4.1429

>NTDB_id=616212 LG307_RS06870 WP_404449267.1 1297834..1298022(+) (comZ) [Sutcliffiella horikoshii strain ADH2-198]
MEQDRTMQYMAIAMKYLPEAKQMLDETGLELQPQHIQPLVSLLTKVMDEAYELGKQNALDME

Nucleotide


Download         Length: 189 bp        

>NTDB_id=616212 LG307_RS06870 WP_404449267.1 1297834..1298022(+) (comZ) [Sutcliffiella horikoshii strain ADH2-198]
ATGGAACAAGATAGAACAATGCAGTATATGGCTATAGCAATGAAATATTTACCGGAAGCAAAACAAATGCTGGATGAAAC
AGGTTTGGAACTACAGCCTCAACATATCCAACCGCTTGTCTCTTTACTGACAAAAGTGATGGATGAAGCATATGAGCTTG
GGAAACAAAATGCTTTAGATATGGAATGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.724

93.548

0.484