Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM110093_RS06790 Genome accession   NZ_CP085167
Coordinates   1402865..1403395 (-) Length   176 a.a.
NCBI ID   WP_243267296.1    Uniprot ID   -
Organism   Sulfitobacter sp. DSM 110093     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1397865..1408395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM110093_RS06765 (DSM110093_01365) - 1398000..1398983 (-) 984 WP_243267288.1 tyrosine recombinase -
  DSM110093_RS06770 (DSM110093_01366) - 1398980..1400614 (-) 1635 WP_243267290.1 hypothetical protein -
  DSM110093_RS06775 (DSM110093_01367) - 1400632..1400781 (-) 150 WP_167360187.1 hypothetical protein -
  DSM110093_RS06780 (DSM110093_01368) - 1400862..1401458 (+) 597 WP_243267292.1 shikimate kinase -
  DSM110093_RS06785 (DSM110093_01369) aroB 1401451..1402566 (+) 1116 WP_243267294.1 3-dehydroquinate synthase -
  DSM110093_RS06790 (DSM110093_01370) ssb 1402865..1403395 (-) 531 WP_243267296.1 single-stranded DNA-binding protein Machinery gene
  DSM110093_RS06795 (DSM110093_01371) - 1403601..1404212 (+) 612 WP_243267297.1 lytic transglycosylase domain-containing protein -
  DSM110093_RS06800 (DSM110093_01372) - 1404395..1404922 (+) 528 WP_243267298.1 hypothetical protein -
  DSM110093_RS06805 (DSM110093_01373) - 1405017..1407107 (-) 2091 WP_243267299.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18129.72 Da        Isoelectric Point: 5.2868

>NTDB_id=615689 DSM110093_RS06790 WP_243267296.1 1402865..1403395(-) (ssb) [Sulfitobacter sp. DSM 110093]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGYGGGGGGNDYGGGYDSGPSSQGGGGKDYGGGNG
GGGGGGSRDLDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=615689 DSM110093_RS06790 WP_243267296.1 1402865..1403395(-) (ssb) [Sulfitobacter sp. DSM 110093]
ATGGCCGGCTCAGTGAACAAAGTGATCCTAATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAAAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAGACATGGAAAGACCGCAACACCGGCGAACGCCGCGAGAAGACCGAGT
GGCATTCTGTCGCGATCTTCCAAGAAGGTCTGGTCCGCATCGCCGAGCAGTACCTCAAGAAGGGCTCCAAGGTTTACATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGACCAATCCGGCGCAGACCGCTACAGCACCGAAGTCGTGCTACAAGGCTT
TGGCGGCACGCTGACCATGCTTGACGGTCCCGGTGGCGGCTCCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCGGCGGCG
GCAATGACTACGGCGGCGGCTATGACAGCGGCCCCTCCTCGCAAGGTGGCGGTGGCAAAGACTACGGCGGCGGCAATGGT
GGCGGCGGTGGCGGCGGCAGCCGTGACCTCGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.136

100

0.511
  ssb Glaesserella parasuis strain SC1401

44.898

100

0.5
  ssb Neisseria meningitidis MC58

41.341

100

0.42
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.415