Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LIO33_RS08885 Genome accession   NZ_CP085088
Coordinates   1804239..1805606 (-) Length   455 a.a.
NCBI ID   WP_012027916.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799239..1810606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS08860 - 1799995..1801275 (-) 1281 WP_012027911.1 MFS transporter -
  LIO33_RS08865 - 1801367..1802026 (-) 660 WP_012028544.1 LiaF transmembrane domain-containing protein -
  LIO33_RS08870 - 1802031..1802477 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  LIO33_RS08875 - 1802655..1803413 (-) 759 WP_002939965.1 TIGR00266 family protein -
  LIO33_RS08880 - 1803621..1804115 (-) 495 WP_012027915.1 carbonic anhydrase -
  LIO33_RS08885 radA 1804239..1805606 (-) 1368 WP_012027916.1 DNA repair protein RadA Machinery gene
  LIO33_RS08890 - 1805613..1806146 (-) 534 WP_012028546.1 histidine phosphatase family protein -
  LIO33_RS08895 - 1806153..1806596 (-) 444 WP_002939955.1 dUTP diphosphatase -
  LIO33_RS08900 - 1806702..1808486 (-) 1785 WP_012028547.1 ABC transporter ATP-binding protein -
  LIO33_RS08905 - 1808487..1810193 (-) 1707 WP_012028548.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49877.36 Da        Isoelectric Point: 6.1911

>NTDB_id=615343 LIO33_RS08885 WP_012027916.1 1804239..1805606(-) (radA) [Streptococcus suis strain Ssuis_MA1]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFMGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=615343 LIO33_RS08885 WP_012027916.1 1804239..1805606(-) (radA) [Streptococcus suis strain Ssuis_MA1]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTGTCATCCATTCAAGTGGCTCGCACTAAGACTAACATGGAGGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTACCGGGGAGTCTAGTTCTCATTGGCGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCAGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTACGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAAGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGCTTCGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACTATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
GCTCCAAAACCAAGACGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCTTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATGGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGTATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622