Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   LIO34_RS09175 Genome accession   NZ_CP085085
Coordinates   1840532..1841254 (-) Length   240 a.a.
NCBI ID   WP_012775334.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835532..1846254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS09155 - 1835603..1836829 (-) 1227 WP_002938158.1 cysteine desulfurase -
  LIO34_RS09160 sufD 1836831..1838093 (-) 1263 WP_002938159.1 Fe-S cluster assembly protein SufD -
  LIO34_RS09165 sufC 1838110..1838883 (-) 774 WP_002938165.1 Fe-S cluster assembly ATPase SufC -
  LIO34_RS09170 - 1839363..1840535 (-) 1173 WP_002938168.1 glycosyltransferase family 4 protein -
  LIO34_RS09175 mecA 1840532..1841254 (-) 723 WP_012775334.1 adaptor protein MecA Regulator
  LIO34_RS09180 - 1841382..1842218 (-) 837 WP_013730561.1 undecaprenyl-diphosphate phosphatase -
  LIO34_RS09185 - 1842345..1843910 (+) 1566 WP_013730562.1 ABC transporter substrate-binding protein/permease -
  LIO34_RS09190 - 1843903..1844646 (+) 744 WP_009910795.1 amino acid ABC transporter ATP-binding protein -
  LIO34_RS09195 - 1844770..1844979 (-) 210 WP_009910800.1 hypothetical protein -
  LIO34_RS09200 - 1845065..1845967 (-) 903 WP_002942264.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28000.54 Da        Isoelectric Point: 4.0497

>NTDB_id=615187 LIO34_RS09175 WP_012775334.1 1840532..1841254(-) (mecA) [Streptococcus suis strain Ssuis_MA8]
MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDL
DQNLNFDEFTDLSELGDVASMTPDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPALQEHGTLMLPLAAIEELRKVPTV

Nucleotide


Download         Length: 723 bp        

>NTDB_id=615187 LIO34_RS09175 WP_012775334.1 1840532..1841254(-) (mecA) [Streptococcus suis strain Ssuis_MA8]
ATGAAAGTAAAGCAAATTAGTGATTCAACCTTGAAAATCACTATAAAATTAGATGATTTGGAAGAGAGAGGAATGGAACT
TTCGGACTTTCTCATTCCGCAAGAAAAGACAGAGGAGTTCTTCTATACTGTTTTGGATGAATTGGATTTACCAATGACTT
TCCGAGAAAGCGGTATGTTGAGTTTTCGTGTGACTCCGAAGCCAGATCGGGTGGACATCTTTGTTACCAAATCTGATTTG
GATCAGAACTTGAATTTTGATGAATTTACAGATTTGTCGGAACTTGGTGATGTCGCAAGTATGACTCCAGATGAGTTTTT
CAAGAGTTTGGAGCAAACCGTTCGTGAGAAAAGTGCACCGGATGCAACAGCAGTTCGTCATTTGGAAGAGGTAGAGCAAG
AGGAAGAAGCAGATGAAGAGGAGCAGGAGCGCTATATTTACTATATTTTGGAATTTCCAACGATAGAGGATCTGTTTACT
TTTGTTGGTACGGTTGATTATCCAGTAGAAGAATCGGAATTATATAAAATGGATGGTCACTACTACTTGACAGTTCTTAT
CAATGTAGAAAATCGTTCCAAGCAGTATCCAGGCTACATTCTCTCAAGAATGTTGGAATTTACCAATGATACTAAGTTGA
CCAGACCTGCTTTACAAGAACACGGAACTTTGATGCTTCCGCTTGCGGCAATCGAGGAGCTTAGGAAGGTTCCGACAGTA
TGA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

52.049

100

0.529
  mecA Streptococcus pneumoniae D39

52.049

100

0.529
  mecA Streptococcus pneumoniae R6

52.049

100

0.529
  mecA Streptococcus pneumoniae TIGR4

52.049

100

0.529
  mecA Streptococcus mutans UA159

50.41

100

0.513
  mecA Streptococcus thermophilus LMD-9

47.5

100

0.475
  mecA Streptococcus thermophilus LMG 18311

47.083

100

0.471