Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   NQZ96_RS03925 Genome accession   NZ_CP102137
Coordinates   806753..810403 (+) Length   1216 a.a.
NCBI ID   WP_257125829.1    Uniprot ID   -
Organism   Streptococcus suis strain M104300_S20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 801753..815403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ96_RS03920 (NQZ96_03920) rexB 803487..806753 (+) 3267 WP_011922284.1 ATP-dependent nuclease subunit B Machinery gene
  NQZ96_RS03925 (NQZ96_03925) rexA 806753..810403 (+) 3651 WP_257125829.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NQZ96_RS03930 (NQZ96_03930) plsY 810525..811169 (-) 645 WP_012775062.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  NQZ96_RS03935 (NQZ96_03935) parE 811312..813255 (+) 1944 WP_012775063.1 DNA topoisomerase IV subunit B -
  NQZ96_RS03940 (NQZ96_03940) - 813285..814097 (+) 813 WP_011922289.1 hypothetical protein -
  NQZ96_RS03945 (NQZ96_03945) fic 814278..814884 (+) 607 Protein_733 protein adenylyltransferase Fic -

Sequence

Protein


Download         Length: 1216 a.a.        Molecular weight: 139684.00 Da        Isoelectric Point: 5.0598

>NTDB_id=614989 NQZ96_RS03925 WP_257125829.1 806753..810403(+) (rexA) [Streptococcus suis strain M104300_S20]
MAFEQFLSAEEIKAVQLAEAHSDKQQKRTAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFT
VKAAGELKERIEKKLNETIAETTDMELRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEEDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQMLEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQSG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRGINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRAYAKLHSIYD
MIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVNI

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=614989 NQZ96_RS03925 WP_257125829.1 806753..810403(+) (rexA) [Streptococcus suis strain M104300_S20]
ATGGCTTTTGAACAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCCATTCTGATAAGCAGCAAAA
ACGCACAGCTGAGCAGATTGAAGCTATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CTTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTATAGGGATTGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCGGCTGGTGAATTGAAGGAGCGGATTGAGAAAAAGCTCAATGAAACTATTGCGGAGACGACCGATATGGAATT
GCGTCGGCATTTGTCGGCCCAGTTGGCAGATTTGACTAAGGCGGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACCACCTATGGTTATAGCCTTGGTATTTCTCCGCAGTTTCGGATTTTACAGGATGAGACTGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAAGAGGATGAAAATGGTGCATTCCGCAAACTGGTTCGCAATTT
TTCGGGCAACCGCAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAAAGAACAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATGCTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGGTCTGCTAAATATTTTGCAAATGTGGAAGAAGTCTTGGATTTGTTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAACGGGTTGAAAGAATTCTTCTCATCAATAATCAGTCCAGAGGCAAGGGCCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGTAAGAGCCAGATTATCTCAGAACTACGAGATTTGGGTCA
GGAAGTTTATGAATTGACCCTGCTGAAAGACTATCAGGTTCAAGCTTTGCCACTACTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCCTTTGAATTTGGCGACATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAGAAATATCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGTGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCAAATCCTCAGTCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAAGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGAATGAGATGGAATACTTGATTTACGATCAGCAGGATAGCGCAAACTCTTCAACAGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGACCTCATTATGTCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATGCTGGATACCTTGCGGGGTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATTCGATGAAGATGAACTGACACGGATTTCCTTGCA
GGCCGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAGCAAGTGGGCAACATCCTGAACTGATGTCAGAAA
AGTTGAAGAAGAAAATCACGGATTTCTTGTCTATTTTGGAAAATTGGCGTGCCTATGCCAAACTGCATTCTATTTATGAC
ATGATTTGGAAGATGTTCAATGAAAAATTCTACTATGACTATGTCGGTGCGCTTCCAAATGGCAGCAAGCGTCAGGCCAA
TCTATACGCACTTGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGATTGTCTCGCTTCATCGCCATGATTG
ATCGTGCCTTAGCAAATGACAAGGACTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTTATGACTATT
CACAAGTCAAAAGGTTTGGAGTTCAAGTATGTCTTCCTCATGAACATCGATAAGCGATTTAACTTGGAAGACCATTACCA
ATCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCAGATATGAAAGATAAGGTAAATAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACCCTCCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCGGAACAA
ATGCGGTTGCTTTATGTTGCACTAACACGTGCTGAGAAGAAGCTGTATCTGGTTGGAAAGGGTAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTAGCCCAATCAACTCGTGAAAGTATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAGTTGTCTTCTGTCCAAGAGTTGAACGAACGCTATAAGGCTGCTATAGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAGCTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCCAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGCAGCCCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTGTATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAACATATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.003

100

0.523