Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   NQZ98_RS00850 Genome accession   NZ_CP102135
Coordinates   135285..135719 (+) Length   144 a.a.
NCBI ID   WP_079268055.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130285..140719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS00815 (NQZ98_00815) - 131027..131392 (+) 366 WP_002936568.1 DUF1033 family protein -
  NQZ98_RS00820 (NQZ98_00820) - 131427..132377 (-) 951 WP_024399580.1 S66 peptidase family protein -
  NQZ98_RS00825 (NQZ98_00825) comGA 132463..133413 (+) 951 WP_024399581.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ98_RS00830 (NQZ98_00830) comGB 133325..134362 (+) 1038 WP_257116642.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ98_RS00835 (NQZ98_00835) comGC 134364..134645 (+) 282 WP_024387069.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ98_RS00840 (NQZ98_00840) comGD 134626..135033 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD Machinery gene
  NQZ98_RS00845 (NQZ98_00845) comGE 135005..135298 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ98_RS00850 (NQZ98_00850) comGF/cglF 135285..135719 (+) 435 WP_079268055.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ98_RS00855 (NQZ98_00855) comGG 135697..136224 (+) 528 WP_024399584.1 competence type IV pilus minor pilin ComGG -
  NQZ98_RS00860 (NQZ98_00860) - 136370..137233 (+) 864 WP_105141859.1 IS982 family transposase -
  NQZ98_RS00865 (NQZ98_00865) - 137478..137645 (-) 168 WP_171992300.1 hypothetical protein -
  NQZ98_RS00870 (NQZ98_00870) - 137689..138147 (-) 459 WP_024387081.1 hypothetical protein -
  NQZ98_RS00875 (NQZ98_00875) - 138151..138366 (-) 216 WP_228380969.1 hypothetical protein -
  NQZ98_RS00880 (NQZ98_00880) - 138415..138612 (-) 198 WP_228380148.1 hypothetical protein -
  NQZ98_RS00885 (NQZ98_00885) - 138609..139448 (-) 840 WP_024399985.1 ATP-binding protein -
  NQZ98_RS00890 (NQZ98_00890) - 139460..140304 (-) 845 Protein_140 phage replisome organizer N-terminal domain-containing protein -
  NQZ98_RS00895 (NQZ98_00895) - 140294..140572 (-) 279 WP_024399988.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16485.85 Da        Isoelectric Point: 8.8227

>NTDB_id=614765 NQZ98_RS00850 WP_079268055.1 135285..135719(+) (comGF/cglF) [Streptococcus suis strain M106471_S40]
MLKSKIPAFTLLECLVALVILSGSLLIFEGLSKLLVQEAHYHRQSVQKEWLVFSSQLRSEWDQSELVKVENGKVYVNKAG
QALAFGKSRSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=614765 NQZ98_RS00850 WP_079268055.1 135285..135719(+) (comGF/cglF) [Streptococcus suis strain M106471_S40]
TTGTTAAAAAGTAAAATTCCTGCTTTTACACTCTTGGAATGTTTGGTGGCTCTAGTCATTCTGTCAGGTAGCCTCTTGAT
TTTTGAAGGCTTATCCAAATTACTAGTCCAGGAAGCGCATTATCACCGTCAATCTGTCCAAAAGGAGTGGCTAGTATTTT
CTAGTCAGTTGCGGTCGGAATGGGACCAGTCGGAATTAGTCAAGGTTGAAAATGGCAAGGTCTATGTCAATAAGGCTGGA
CAAGCATTAGCCTTTGGCAAGTCACGGTCGGATGATTTTCGGAAAACCAATGATAGGGGTCAGGGCTACCAACCCATGCT
CTATCAGGTGGATAGCGCAGCCATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GGACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae TIGR4

54.61

97.917

0.535
  comGF/cglF Streptococcus pneumoniae Rx1

54.61

97.917

0.535
  comGF/cglF Streptococcus pneumoniae D39

54.61

97.917

0.535
  comGF/cglF Streptococcus pneumoniae R6

54.61

97.917

0.535
  comGF/cglF Streptococcus mitis NCTC 12261

55.224

93.056

0.514
  comGF Streptococcus mutans UA140

49.306

100

0.493
  comGF/cglF Streptococcus mitis SK321

52.239

93.056

0.486
  comGF Streptococcus mutans UA159

48.611

100

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

45.39

97.917

0.444