Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQZ84_RS02180 Genome accession   NZ_CP102094
Coordinates   436147..436812 (+) Length   221 a.a.
NCBI ID   WP_044768663.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431147..441812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS02155 (NQZ84_02155) - 431358..432758 (+) 1401 WP_044768661.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NQZ84_RS02160 (NQZ84_02160) - 432760..433131 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  NQZ84_RS02165 (NQZ84_02165) cysK 433157..434083 (-) 927 WP_002937015.1 cysteine synthase A -
  NQZ84_RS02170 (NQZ84_02170) - 434173..434805 (-) 633 WP_015646510.1 YigZ family protein -
  NQZ84_RS02175 (NQZ84_02175) comFA/cflA 434862..436154 (+) 1293 WP_257049611.1 DEAD/DEAH box helicase Machinery gene
  NQZ84_RS02180 (NQZ84_02180) comFC/cflB 436147..436812 (+) 666 WP_044768663.1 ComF family protein Machinery gene
  NQZ84_RS02185 (NQZ84_02185) hpf 436889..437431 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NQZ84_RS02190 (NQZ84_02190) - 437487..437690 (+) 204 WP_044768664.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25706.52 Da        Isoelectric Point: 8.4541

>NTDB_id=614677 NQZ84_RS02180 WP_044768663.1 436147..436812(+) (comFC/cflB) [Streptococcus suis strain 12RC1]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSSFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=614677 NQZ84_RS02180 WP_044768663.1 436147..436812(+) (comFC/cflB) [Streptococcus suis strain 12RC1]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGTCTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48