Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NQZ84_RS02065 Genome accession   NZ_CP102094
Coordinates   412454..413071 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain 12RC1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407454..418071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS02045 (NQZ84_02045) - 408141..408974 (+) 834 WP_257049590.1 energy-coupling factor transporter transmembrane component T family protein -
  NQZ84_RS02050 (NQZ84_02050) - 409134..409337 (+) 204 WP_004195223.1 cold-shock protein -
  NQZ84_RS02055 (NQZ84_02055) rsmG 409527..410240 (-) 714 WP_004195222.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NQZ84_RS02060 (NQZ84_02060) pbp1a 410299..412473 (-) 2175 WP_257049592.1 penicillin-binding protein PBP1A -
  NQZ84_RS02065 (NQZ84_02065) recU 412454..413071 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  NQZ84_RS02070 (NQZ84_02070) - 413137..413676 (+) 540 WP_257049595.1 DUF1273 domain-containing protein -
  NQZ84_RS02075 (NQZ84_02075) gpsB 413747..414082 (+) 336 WP_004194167.1 cell division regulator GpsB -
  NQZ84_RS02085 (NQZ84_02085) - 414639..415805 (+) 1167 WP_257049597.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  NQZ84_RS02090 (NQZ84_02090) - 415815..417269 (+) 1455 WP_105115456.1 cell division site-positioning protein MapZ family protein -
  NQZ84_RS02095 (NQZ84_02095) - 417490..417972 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=614673 NQZ84_RS02065 WP_004194173.1 412454..413071(-) (recU) [Streptococcus suis strain 12RC1]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=614673 NQZ84_RS02065 WP_004194173.1 412454..413071(-) (recU) [Streptococcus suis strain 12RC1]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473