Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LG653_RS00985 Genome accession   NZ_CP084921
Coordinates   183757..184239 (-) Length   160 a.a.
NCBI ID   WP_005804550.1    Uniprot ID   A0A009N252
Organism   Acinetobacter pittii strain CEP14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178757..189239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS00950 (LG653_00950) - 178841..179872 (+) 1032 WP_005804553.1 lipase secretion chaperone -
  LG653_RS00955 (LG653_00955) lip 179988..180929 (+) 942 WP_226789413.1 triacylglycerol lipase -
  LG653_RS00960 (LG653_00960) rplS 180982..181350 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  LG653_RS00965 (LG653_00965) trmD 181570..182325 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LG653_RS00970 (LG653_00970) rimM 182368..182916 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  LG653_RS00975 (LG653_00975) rpsP 182936..183187 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LG653_RS00980 (LG653_00980) pilE 183335..183760 (-) 426 WP_025464177.1 type IV pilin protein Machinery gene
  LG653_RS00985 (LG653_00985) pilY2 183757..184239 (-) 483 WP_005804550.1 type IV pilin protein Machinery gene
  LG653_RS00990 (LG653_00990) pilY1 184250..188104 (-) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  LG653_RS00995 (LG653_00995) pilX 188116..188925 (-) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17550.79 Da        Isoelectric Point: 8.4721

>NTDB_id=614063 LG653_RS00985 WP_005804550.1 183757..184239(-) (pilY2) [Acinetobacter pittii strain CEP14]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=614063 LG653_RS00985 WP_005804550.1 183757..184239(-) (pilY2) [Acinetobacter pittii strain CEP14]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N252

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.678

100

0.45