Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   NMT99_RS08085 Genome accession   NZ_CP101290
Coordinates   1544402..1544851 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain LjM2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539402..1549851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS08045 ctaE 1539418..1540041 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  NMT99_RS08050 ctaF 1540044..1540376 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  NMT99_RS08055 ctaG 1540404..1541297 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  NMT99_RS08060 ylbA 1541329..1541691 (-) 363 WP_003232238.1 YugN family protein -
  NMT99_RS08065 ylbB 1541831..1542277 (+) 447 WP_029726520.1 CBS domain-containing protein -
  NMT99_RS08070 ylbC 1542361..1543401 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  NMT99_RS08075 ylbD 1543633..1544031 (+) 399 WP_003232233.1 YlbD family protein -
  NMT99_RS08080 ylbE 1544047..1544286 (+) 240 WP_003232231.1 YlbE-like family protein -
  NMT99_RS08085 ylbF 1544402..1544851 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  NMT99_RS08090 ylbG 1544906..1545178 (+) 273 WP_024573211.1 YlbG family protein -
  NMT99_RS08095 rsmD 1545501..1546055 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NMT99_RS08100 coaD 1546060..1546545 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  NMT99_RS08105 spoVV 1546556..1547782 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  NMT99_RS08110 ylbK 1547963..1548745 (+) 783 WP_003232221.1 patatin family protein -
  NMT99_RS08115 sepM 1548747..1549772 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=609990 NMT99_RS08085 WP_003221370.1 1544402..1544851(+) (ylbF) [Bacillus subtilis strain LjM2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=609990 NMT99_RS08085 WP_003221370.1 1544402..1544851(+) (ylbF) [Bacillus subtilis strain LjM2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1