Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H8R36_RS07435 Genome accession   NZ_CP084084
Coordinates   1426789..1427304 (-) Length   171 a.a.
NCBI ID   WP_002855725.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2074     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1421789..1432304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS07420 (H8R36_001248) - 1421889..1423616 (-) 1728 WP_002856431.1 flagellin A -
  H8R36_RS07425 (H8R36_001249) - 1423699..1425525 (-) 1827 WP_002856576.1 motility associated factor glycosyltransferase family protein -
  H8R36_RS07430 - 1425537..1426788 (-) 1252 Protein_1434 DUF2920 family protein -
  H8R36_RS07435 (H8R36_001252) ctsG 1426789..1427304 (-) 516 WP_002855725.1 type II secretion system protein Machinery gene
  H8R36_RS07440 (H8R36_001253) tsaD 1427305..1428312 (-) 1008 WP_002855919.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H8R36_RS07445 (H8R36_001254) - 1428309..1429703 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H8R36_RS07450 (H8R36_001255) dxr 1429705..1430775 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H8R36_RS07455 (H8R36_001256) cdsA 1430772..1431497 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  H8R36_RS07460 (H8R36_001257) - 1431506..1431844 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18659.50 Da        Isoelectric Point: 7.8499

>NTDB_id=609456 H8R36_RS07435 WP_002855725.1 1426789..1427304(-) (ctsG) [Campylobacter jejuni strain MS2074]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVDFTSPSSNKACVILSKNENFKNL
ASKTYLLTGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=609456 H8R36_RS07435 WP_002855725.1 1426789..1427304(-) (ctsG) [Campylobacter jejuni strain MS2074]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGTGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAGACTTTACGAGCCCTTCTAGCAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAACAGGAGGAAGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.941

99.415

0.924