Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   A7H1H_RS03795 Genome accession   NC_021878
Coordinates   743092..744942 (-) Length   616 a.a.
NCBI ID   WP_020847629.1    Uniprot ID   -
Organism   Aliarcobacter butzleri 7h1h     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 738092..749942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7H1H_RS03780 (A7H1H_0771) - 738501..739628 (+) 1128 WP_020847626.1 iron-containing alcohol dehydrogenase -
  A7H1H_RS03785 (A7H1H_0772) - 739677..741938 (-) 2262 WP_020847627.1 methyl-accepting chemotaxis protein -
  A7H1H_RS03790 (A7H1H_0773) - 742067..743089 (-) 1023 WP_020847628.1 alanine racemase -
  A7H1H_RS03795 (A7H1H_0774) uvrC 743092..744942 (-) 1851 WP_020847629.1 excinuclease ABC subunit UvrC Machinery gene
  A7H1H_RS03800 (A7H1H_0775) - 745099..747492 (+) 2394 WP_020847630.1 methyl-accepting chemotaxis protein -
  A7H1H_RS03805 (A7H1H_0777) - 747603..747989 (+) 387 Protein_748 transposase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72316.49 Da        Isoelectric Point: 9.1279

>NTDB_id=60638 A7H1H_RS03795 WP_020847629.1 743092..744942(-) (uvrC) [Aliarcobacter butzleri 7h1h]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEYFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNENLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=60638 A7H1H_RS03795 WP_020847629.1 743092..744942(-) (uvrC) [Aliarcobacter butzleri 7h1h]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTCGAAAGTTGCGAGTGGATTGTTGTACCAAATGAACACGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATCTTGCTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAATATTTTCCAAGGCTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAAGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTATATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGATTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCAGGAATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGAAAACTAACCTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAATAAAAAGATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAATTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGCTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAATTTGAATACTTTTGATAAAAA
AGCCTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGAGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAAATTGATGCGAAAGCCCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.073

97.89

0.51

Multiple sequence alignment