Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HK86_RS14680 Genome accession   NC_021847
Coordinates   3140346..3140864 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135346..3145864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS14655 (M634_15040) rimM 3135454..3136002 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  HK86_RS14660 (M634_15045) rpsP 3136031..3136279 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  HK86_RS14665 (M634_15050) ffh 3136489..3137871 (-) 1383 WP_005462555.1 signal recognition particle protein -
  HK86_RS14670 (M634_15055) - 3138084..3138878 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  HK86_RS14675 (M634_15060) - 3139004..3140284 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  HK86_RS14680 (M634_15065) luxS 3140346..3140864 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  HK86_RS14685 (M634_15070) - 3140930..3141535 (-) 606 WP_015297256.1 hypothetical protein -
  HK86_RS14690 (M634_15075) gshA 3141560..3143128 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=60544 HK86_RS14680 WP_005462534.1 3140346..3140864(-) (luxS) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=60544 HK86_RS14680 WP_005462534.1 3140346..3140864(-) (luxS) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTCGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACAGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTCGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment