Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K8P04_RS06120 Genome accession   NZ_CP082856
Coordinates   1213952..1214668 (+) Length   238 a.a.
NCBI ID   WP_012055311.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1479     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208952..1219668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P04_RS06100 (K8P04_06035) - 1209891..1210421 (-) 531 WP_015701952.1 DsbE family thiol:disulfide interchange protein -
  K8P04_RS06105 (K8P04_06040) nrfE 1210421..1212328 (-) 1908 WP_077643669.1 heme lyase NrfEFG subunit NrfE -
  K8P04_RS06110 (K8P04_06045) suhB 1212437..1213240 (-) 804 WP_015701954.1 inositol-1-monophosphatase -
  K8P04_RS06115 (K8P04_06050) comN 1213440..1213952 (+) 513 WP_077643668.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K8P04_RS06120 (K8P04_06055) comO 1213952..1214668 (+) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  K8P04_RS06125 (K8P04_06060) comP 1214683..1215366 (+) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  K8P04_RS06130 (K8P04_06065) comQ 1215359..1215646 (+) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  K8P04_RS06135 (K8P04_06070) recC 1215692..1219072 (+) 3381 WP_061659653.1 exodeoxyribonuclease V subunit gamma -
  K8P04_RS06140 (K8P04_06075) nrdR 1219127..1219576 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26745.09 Da        Isoelectric Point: 9.5508

>NTDB_id=603095 K8P04_RS06120 WP_012055311.1 1213952..1214668(+) (comO) [Haemophilus influenzae strain FDAARGOS_1479]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCVGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=603095 K8P04_RS06120 WP_012055311.1 1213952..1214668(+) (comO) [Haemophilus influenzae strain FDAARGOS_1479]
ATGATGAAAGTCTTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGCTATTACATTTAAAGTTACAGGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTGTTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992