Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   K6748_RS22760 Genome accession   NZ_CP082308
Coordinates   1716684..1717781 (-) Length   365 a.a.
NCBI ID   WP_025767933.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HNV2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711684..1722781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS22745 (K6748_22635) - 1712263..1713321 (-) 1059 WP_005373588.1 HlyD family secretion protein -
  K6748_RS22750 (K6748_22640) slyA 1713357..1713812 (-) 456 WP_017635177.1 transcriptional regulator SlyA -
  K6748_RS22755 (K6748_22645) luxQ 1714108..1716684 (-) 2577 WP_017635176.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  K6748_RS22760 (K6748_22650) luxP 1716684..1717781 (-) 1098 WP_025767933.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  K6748_RS22765 (K6748_22655) - 1718112..1718429 (-) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  K6748_RS22770 (K6748_22660) - 1718426..1719076 (-) 651 WP_005373594.1 YceH family protein -
  K6748_RS22775 (K6748_22665) - 1719242..1719466 (-) 225 WP_005385630.1 hypothetical protein -
  K6748_RS22780 (K6748_22670) - 1719687..1720001 (+) 315 WP_005373603.1 DUF496 family protein -
  K6748_RS22785 (K6748_22675) - 1720123..1721466 (+) 1344 WP_025767935.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=601215 K6748_RS22760 WP_025767933.1 1716684..1717781(-) (luxP) [Vibrio alginolyticus strain HNV2]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMLNGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=601215 K6748_RS22760 WP_025767933.1 1716684..1717781(-) (luxP) [Vibrio alginolyticus strain HNV2]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAGAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGACGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAGAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTATTTCTCGGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAACCAGTTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGATTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGACGATGTCATGCTCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644