Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   M5C73_RS02125 Genome accession   NZ_CP098790
Coordinates   422370..423182 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain WiKim0124     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 417370..428182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS02100 (M5C73_02100) ytpR 417595..418221 (+) 627 WP_058204083.1 YtpR family tRNA-binding protein -
  M5C73_RS02105 (M5C73_02105) - 418383..419723 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  M5C73_RS02110 (M5C73_02110) ssbB 419813..420202 (+) 390 WP_010905314.1 single-stranded DNA-binding protein Machinery gene
  M5C73_RS02115 (M5C73_02115) groES 420322..420606 (+) 285 WP_003131589.1 co-chaperone GroES -
  M5C73_RS02120 (M5C73_02120) groL 420695..422323 (+) 1629 WP_003131585.1 chaperonin GroEL -
  M5C73_RS02125 (M5C73_02125) vicX 422370..423182 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  M5C73_RS02130 (M5C73_02130) vicK 423353..424795 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  M5C73_RS02135 (M5C73_02135) yycF 424788..425489 (-) 702 WP_003131580.1 response regulator YycF -
  M5C73_RS02140 (M5C73_02140) tmk 425667..426302 (+) 636 WP_015425847.1 dTMP kinase -
  M5C73_RS02145 (M5C73_02145) - 426433..427293 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  M5C73_RS02150 (M5C73_02150) yaaT 427345..428127 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=601128 M5C73_RS02125 WP_003131583.1 422370..423182(-) (vicX) [Lactococcus lactis strain WiKim0124]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=601128 M5C73_RS02125 WP_003131583.1 422370..423182(-) (vicX) [Lactococcus lactis strain WiKim0124]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACCCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCCATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATCTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685