Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAJP3042_RS01825 Genome accession   NZ_CP082243
Coordinates   375388..375825 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 370388..380825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS01800 (BAJP3042_01800) - 371408..372544 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  BAJP3042_RS01805 (BAJP3042_01805) - 372559..372993 (+) 435 WP_222835636.1 RDD family protein -
  BAJP3042_RS01810 (BAJP3042_01810) - 373110..373388 (+) 279 WP_263612330.1 YckD family protein -
  BAJP3042_RS01815 (BAJP3042_01815) - 373492..374928 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  BAJP3042_RS01820 (BAJP3042_01820) nin/comJ 374969..375367 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  BAJP3042_RS01825 (BAJP3042_01825) nucA/comI 375388..375825 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAJP3042_RS01830 (BAJP3042_01830) hxlB 376182..376739 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  BAJP3042_RS01835 (BAJP3042_01835) hxlA 376736..377371 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  BAJP3042_RS01840 (BAJP3042_01840) - 377604..377966 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=600419 BAJP3042_RS01825 WP_003156588.1 375388..375825(-) (nucA/comI) [Bacillus amyloliquefaciens strain JP3042]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=600419 BAJP3042_RS01825 WP_003156588.1 375388..375825(-) (nucA/comI) [Bacillus amyloliquefaciens strain JP3042]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641