Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PAC42_RS10670 Genome accession   NZ_CP097560
Coordinates   2262135..2262749 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain C4.2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2257135..2267749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS10645 (PAC42_10635) - 2257596..2257859 (+) 264 WP_033968913.1 DUF1653 domain-containing protein -
  PAC42_RS10650 (PAC42_10640) topA 2257950..2260556 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  PAC42_RS10655 (PAC42_10645) - 2260663..2261181 (+) 519 WP_033975946.1 DUF6586 family protein -
  PAC42_RS10660 (PAC42_10650) - 2261387..2261620 (+) 234 WP_003109483.1 hypothetical protein -
  PAC42_RS10665 (PAC42_10655) sulA 2261641..2262123 (-) 483 WP_033968910.1 SOS-induced cell division inhibitor SulA -
  PAC42_RS10670 (PAC42_10660) dinR/lexA 2262135..2262749 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PAC42_RS10675 (PAC42_10665) psrA 2262981..2263682 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  PAC42_RS10680 (PAC42_10670) nagZ 2263884..2264882 (+) 999 WP_033968908.1 beta-N-acetylhexosaminidase -
  PAC42_RS10685 (PAC42_10675) - 2264894..2265631 (+) 738 WP_033975949.1 S-methyl-5'-thioinosine phosphorylase -
  PAC42_RS10690 (PAC42_10680) - 2265678..2266307 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=595406 PAC42_RS10670 WP_003091196.1 2262135..2262749(-) (dinR/lexA) [Pseudomonas aeruginosa strain C4.2]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=595406 PAC42_RS10670 WP_003091196.1 2262135..2262749(-) (dinR/lexA) [Pseudomonas aeruginosa strain C4.2]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTCGCGCGCAAGG
GTGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGCGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCTGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTAGTCGCGCGGATCGGCGAGGAGGTCACA
GTGAAACGTTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387