Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M4D82_RS08765 Genome accession   NZ_CP097322
Coordinates   1907155..1909251 (+) Length   698 a.a.
NCBI ID   WP_249765500.1    Uniprot ID   -
Organism   Streptomyces sp. RerS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1902155..1914251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D82_RS08745 (M4D82_08745) - 1903093..1904088 (+) 996 WP_249765497.1 COX15/CtaA family protein -
  M4D82_RS08750 (M4D82_08750) - 1904126..1905247 (-) 1122 WP_249765498.1 amidohydrolase -
  M4D82_RS08755 (M4D82_08755) - 1905508..1905867 (-) 360 WP_249765499.1 hypothetical protein -
  M4D82_RS08760 (M4D82_08760) - 1905892..1906839 (-) 948 WP_249771603.1 heme o synthase -
  M4D82_RS08765 (M4D82_08765) recP/tkt 1907155..1909251 (+) 2097 WP_249765500.1 transketolase Machinery gene
  M4D82_RS08770 (M4D82_08770) tal 1909287..1910405 (+) 1119 WP_249765501.1 transaldolase -
  M4D82_RS08775 (M4D82_08775) zwf 1910408..1911937 (+) 1530 WP_249771605.1 glucose-6-phosphate dehydrogenase -
  M4D82_RS08780 (M4D82_08780) opcA 1911934..1912980 (+) 1047 WP_249765502.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  M4D82_RS08785 (M4D82_08785) pgl 1913060..1913842 (+) 783 WP_249765503.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 74786.64 Da        Isoelectric Point: 5.1731

>NTDB_id=594271 M4D82_RS08765 WP_249765500.1 1907155..1909251(+) (recP/tkt) [Streptomyces sp. RerS4]
MSTKPTTTELEWTELDQRAVDTARILAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPQWVGRDRFVLSAGHSS
LTLYTQLYLGGFGLELDDLKAFRTWGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHMVYAIAGDGCLQEGISHEASALAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTMKRYEAYGWHVQRVEQQENGDLDP
KALYAALQAAKAETGRPSFIAARSIIAWPAPHAQGTEASHGSALGDDEVAATKRVLGFDPERTFEVSDEVIAHTRALGDR
GRDARAAWEKDFSAWRTANPQRAAEFDRIEANELPEGWEDKLPVFEPGKGVATRAASGKVLAALGAVIPELWGGSADLAG
SNNTTIDKNSSFLPVGNPLPEADPYGRTIHFGIREHAMAAAMNGIALHGHTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHVAALRAIPGLNVVRPADANETAVAWREILRRHTKVFGKGAPHGLALTRQGVPTYERNE
DAAKGGYVLFEAEGGEAQVVLIGTGSEVQLAVAAREALQAEGVPARVVSMPSVEWFEEQDQEYKDSVLPPSVKARVAVEA
GIGLTWHRYVGDAGRIVSLEHFGASADGAVLYREFGITAEAVTAAAKESLAAVAADAR

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=594271 M4D82_RS08765 WP_249765500.1 1907155..1909251(+) (recP/tkt) [Streptomyces sp. RerS4]
GTGAGCACCAAGCCGACCACCACAGAGCTCGAGTGGACCGAACTGGACCAGCGGGCCGTCGACACCGCCCGTATCCTGGC
CGCCGACGCGGTCCAGAAGGTCGGGAACGGCCACCCGGGTACGGCGATGAGCCTGGCCCCCGCCGCGTACACCCTTTTCC
AGAAGGTCATGCGGCACGACCCGGCGGACCCGCAGTGGGTCGGCCGTGACCGTTTCGTGCTCTCCGCAGGGCACTCGTCC
CTGACCCTCTACACGCAGCTCTACCTCGGCGGCTTCGGCCTGGAGCTGGACGACCTCAAGGCGTTCCGCACCTGGGGCTC
GAAGACCCCCGGCCACCCGGAGTACGGCCACACGGCCGGCGTCGAGACCACCACCGGCCCCCTCGGCCAGGGTGTGGCGA
ACGCGGTGGGCATGGCCATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCGGAGGCCGCCCCGGGCACCTCCCCGTTC
GACCACATGGTCTACGCGATCGCGGGCGACGGCTGCCTCCAGGAGGGCATCTCCCACGAGGCGTCCGCGCTGGCCGGTCA
CCAGAAGCTCGGCAACCTGGTCCTGCTCTGGGACGACAACCACATCTCCATCGAGGGTGACACGGAGACGGCCGTCTCCG
AGGACACCATGAAGCGCTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCGAGCAGCAGGAGAACGGCGACCTCGACCCG
AAGGCCCTCTACGCGGCCCTCCAGGCGGCCAAGGCCGAGACCGGCCGGCCGTCCTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCGGCCCCGCACGCCCAGGGCACCGAGGCCTCCCACGGTTCGGCCCTCGGCGACGACGAGGTCGCCGCGACCAAGC
GCGTGCTCGGCTTCGACCCGGAGCGGACCTTCGAGGTCTCCGACGAGGTCATCGCGCACACCCGCGCCCTCGGCGACCGC
GGCCGCGACGCCCGCGCCGCCTGGGAGAAGGACTTCTCCGCCTGGCGCACGGCCAACCCGCAGCGCGCCGCCGAGTTCGA
CCGCATCGAGGCCAACGAGCTGCCCGAGGGCTGGGAGGACAAGCTCCCCGTCTTCGAGCCCGGCAAGGGCGTCGCCACCC
GCGCCGCGTCCGGCAAGGTGCTGGCGGCGCTCGGCGCCGTCATCCCGGAGCTGTGGGGCGGCTCGGCCGACCTGGCCGGC
TCCAACAACACGACCATCGACAAGAACTCCTCGTTCCTGCCGGTGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
CACCATCCACTTCGGCATCCGCGAGCACGCCATGGCCGCGGCCATGAACGGCATCGCGCTGCACGGCCACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTCCGCCTCTCCGCTCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACGTCGCCGCGCTGCG
CGCCATCCCGGGTCTGAACGTGGTCCGCCCGGCCGACGCGAACGAGACCGCCGTCGCCTGGCGCGAGATCCTGCGCCGCC
ACACCAAGGTGTTCGGCAAGGGCGCCCCGCACGGTCTGGCGCTCACCCGCCAGGGCGTGCCGACCTACGAGCGCAACGAG
GACGCCGCCAAGGGCGGGTACGTGCTCTTCGAGGCCGAGGGCGGCGAGGCGCAGGTCGTGCTCATCGGCACCGGTTCCGA
GGTCCAGCTCGCCGTCGCCGCGCGCGAGGCGCTGCAGGCCGAGGGCGTTCCCGCCCGGGTCGTCTCGATGCCGTCCGTCG
AGTGGTTCGAGGAGCAGGACCAGGAGTACAAGGACAGCGTCCTGCCGCCCTCCGTCAAGGCGCGAGTCGCGGTCGAGGCG
GGCATCGGCCTGACCTGGCACCGTTACGTCGGCGACGCGGGCCGGATCGTGTCGCTGGAGCACTTCGGCGCTTCCGCCGA
CGGCGCGGTCCTGTACCGCGAGTTCGGCATCACCGCGGAGGCCGTGACCGCGGCGGCCAAGGAATCCCTCGCCGCCGTCG
CCGCCGACGCGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-535)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.69

97.135

0.434