Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABVS_RS16785 Genome accession   NZ_CP080576
Coordinates   236886..237236 (-) Length   116 a.a.
NCBI ID   WP_004731478.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231886..242236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS01085 (ABVS_0223) tadA 232121..232636 (-) 516 WP_004278860.1 tRNA adenosine(34) deaminase TadA -
  ABVS_RS01090 (ABVS_0224) - 232643..233764 (-) 1122 WP_004278862.1 enoyl-CoA hydratase/isomerase family protein -
  ABVS_RS01095 (ABVS_0225) ung 233761..234474 (-) 714 WP_004731474.1 uracil-DNA glycosylase -
  ABVS_RS01100 (ABVS_0226) - 234521..235117 (-) 597 WP_004278864.1 6-pyruvoyl trahydropterin synthase family protein -
  ABVS_RS01105 (ABVS_0227) gspK 235270..236241 (-) 972 WP_017397825.1 type II secretion system minor pseudopilin GspK -
  ABVS_RS01110 (ABVS_0228) xcpW 236248..236889 (-) 642 WP_004278869.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABVS_RS16785 (ABVS_0229) xcpV 236886..237236 (-) 351 WP_004731478.1 type II secretion system protein GspI Machinery gene
  ABVS_RS01120 (ABVS_0230) - 237445..237996 (-) 552 WP_004278872.1 type II secretion system protein -
  ABVS_RS01125 (ABVS_0231) - 238006..238620 (-) 615 WP_004278873.1 TetR/AcrR family transcriptional regulator -
  ABVS_RS01130 (ABVS_0232) - 238662..239435 (-) 774 WP_004278875.1 TatD family hydrolase -
  ABVS_RS01135 (ABVS_0233) - 239463..239804 (-) 342 WP_004278877.1 PilZ domain-containing protein -
  ABVS_RS01140 (ABVS_0234) - 239820..240800 (-) 981 WP_085064301.1 DNA polymerase III subunit delta' -
  ABVS_RS01145 (ABVS_0235) kdsB 240815..241576 (-) 762 WP_005106564.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12933.67 Da        Isoelectric Point: 5.0203

>NTDB_id=594211 ABVS_RS16785 WP_004731478.1 236886..237236(-) (xcpV) [Acinetobacter lwoffii strain VS15]
MVALAIFATAAMTLTKVAIQYTQSTSNAILRTKAQFVALNEVAQMEINQEWMEGTASKQLTQQGETWQIDKRSEPTVSPN
VQRIELQVSLVNQDSGQVESGITSLMFFNHRMNNTP

Nucleotide


Download         Length: 351 bp        

>NTDB_id=594211 ABVS_RS16785 WP_004731478.1 236886..237236(-) (xcpV) [Acinetobacter lwoffii strain VS15]
ATGGTGGCCTTGGCAATTTTTGCGACCGCAGCCATGACCCTGACCAAAGTCGCGATTCAATATACCCAGTCGACCTCGAA
TGCCATTCTACGTACCAAAGCACAGTTTGTTGCCTTAAATGAAGTGGCACAAATGGAAATTAATCAGGAATGGATGGAAG
GGACGGCTTCCAAACAGCTGACCCAGCAAGGTGAAACCTGGCAGATTGACAAGCGCAGCGAACCGACGGTCAGTCCGAAT
GTACAACGGATCGAGCTGCAGGTGAGTCTGGTTAATCAGGACAGTGGTCAGGTGGAATCTGGTATCACCAGCCTGATGTT
CTTTAATCATCGTATGAACAATACTCCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.636

94.828

0.698