Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K2W83_RS04645 Genome accession   NZ_CP080568
Coordinates   1036778..1038577 (-) Length   599 a.a.
NCBI ID   WP_054450242.1    Uniprot ID   A0A0R1FRQ3
Organism   Apilactobacillus kunkeei strain DSMZ 12361     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031778..1043577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2W83_RS04615 (K2W83_04615) - 1032120..1032632 (-) 513 WP_053795643.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  K2W83_RS04620 (K2W83_04620) - 1032647..1033498 (-) 852 WP_054450235.1 methyltransferase domain-containing protein -
  K2W83_RS04625 (K2W83_04625) - 1033594..1034481 (-) 888 WP_054450237.1 RluA family pseudouridine synthase -
  K2W83_RS04630 (K2W83_04630) - 1034474..1035283 (-) 810 WP_053795646.1 NAD kinase -
  K2W83_RS04635 (K2W83_04635) - 1035286..1035918 (-) 633 WP_054450239.1 GTP pyrophosphokinase family protein -
  K2W83_RS04640 (K2W83_04640) - 1036098..1036739 (+) 642 WP_054450240.1 DsbA family protein -
  K2W83_RS04645 (K2W83_04645) pepF 1036778..1038577 (-) 1800 WP_054450242.1 oligoendopeptidase F Regulator
  K2W83_RS04650 (K2W83_04650) - 1038616..1039770 (-) 1155 WP_054450244.1 competence protein CoiA family protein -
  K2W83_RS04655 (K2W83_04655) - 1039763..1040824 (-) 1062 WP_054450246.1 adaptor protein MecA -
  K2W83_RS04660 (K2W83_04660) - 1040885..1041646 (-) 762 WP_054450249.1 MBL fold metallo-hydrolase -
  K2W83_RS04665 (K2W83_04665) - 1041738..1042190 (+) 453 WP_054450251.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69004.94 Da        Isoelectric Point: 4.5723

>NTDB_id=594107 K2W83_RS04645 WP_054450242.1 1036778..1038577(-) (pepF) [Apilactobacillus kunkeei strain DSMZ 12361]
MSEVQQLPKRSEVPEKLTWDLTTIYKTDDDFEADFKECAKEVEAVEKLKTDHFDAKTLLSDLKAIEKLERKVEKLYVYSS
LKSDADTSNSEYQSMNARCADLASKASSALAWFEPAVLNISEDDLKKMLSEESELADYTHYFDELFSQKDHILDAEHEKI
LSSLGNIFDTPSNVYGVMTNSDLKFPVVSDEDGNKVELSNGVYSKLLESTDRSVRKEAFQQLYTVYNQFKNTLASTLSGE
VKVHNFRASMRHFTSAKEAALSNNHIDKKVYQQLIDTVNKYLPLLHRYVNLRKKLLSLDEMHMYDLYTPLFGNSPISYNF
DEAKEESIKALSILGDDYIDHIKEEFNNRWIDVVENKGKRSGAYSSGVYDTNPYILLNWQDNLDNLFTLVHESGHSMHSY
YTTHNQPFQYGDYSIFLAEIASTTNENILTDYLLKNTDDVEVKKYVLNHFLDGFKGTIFRQTQFAEFEDFAHQQEQAGNP
LTAKMLSDFYYELNQRYYGDGVVSDPEIAYEWARIPHFYMNYYVYQYATGFAAAIDLSDGICAHDQEAIDKYIGYLKSGS
SDYPLNVMKKAGIDMTNADYLENAFKVFEERLNELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=594107 K2W83_RS04645 WP_054450242.1 1036778..1038577(-) (pepF) [Apilactobacillus kunkeei strain DSMZ 12361]
ATGAGTGAAGTACAACAATTACCAAAGAGATCAGAAGTACCAGAAAAATTAACCTGGGATTTAACAACTATTTATAAGAC
AGACGATGATTTTGAAGCGGATTTCAAAGAATGCGCCAAAGAAGTTGAAGCTGTCGAAAAGTTAAAGACTGATCATTTTG
ATGCCAAAACACTTTTAAGTGACTTAAAAGCAATCGAAAAACTAGAACGTAAAGTTGAAAAATTATATGTATACTCATCA
TTGAAGAGTGATGCTGATACATCAAATTCAGAATATCAAAGCATGAATGCTAGATGTGCCGATTTAGCATCTAAAGCATC
ATCAGCACTAGCATGGTTTGAACCAGCAGTTTTAAACATTAGTGAAGATGACCTAAAGAAGATGCTATCTGAAGAATCAG
AATTAGCAGATTACACACACTACTTTGACGAACTATTCAGTCAAAAGGACCATATTCTAGATGCTGAACACGAAAAAATT
CTATCAAGTTTAGGTAACATCTTCGATACTCCTTCAAACGTATATGGTGTAATGACCAATTCCGACTTGAAGTTCCCGGT
CGTATCAGACGAAGATGGTAACAAGGTCGAACTATCAAACGGTGTTTACAGTAAGTTACTTGAATCCACAGACAGAAGTG
TTCGTAAGGAAGCATTCCAACAGTTATACACAGTTTATAACCAATTCAAGAACACATTAGCATCAACACTTTCTGGTGAA
GTGAAGGTTCATAACTTTAGAGCTTCAATGCGTCACTTTACCTCAGCTAAGGAAGCTGCATTGAGCAATAACCACATCGA
TAAAAAGGTATACCAACAACTAATTGATACTGTTAATAAGTATCTACCTTTGCTACATCGTTACGTTAATCTAAGAAAGA
AATTACTTTCATTAGACGAAATGCACATGTATGACTTATACACACCATTATTTGGTAACTCACCAATCTCATACAACTTT
GATGAAGCCAAGGAAGAATCAATCAAGGCATTATCAATCCTTGGGGATGATTACATTGATCATATCAAGGAAGAATTTAA
CAATCGTTGGATTGATGTAGTTGAAAATAAGGGAAAGAGAAGTGGGGCATACTCATCAGGTGTATATGACACTAACCCAT
ATATTCTTTTAAACTGGCAAGATAACCTTGATAACTTGTTTACACTGGTTCACGAATCAGGTCACAGTATGCACAGTTAC
TACACAACCCATAATCAACCATTCCAATATGGTGATTATTCAATCTTCTTAGCCGAAATCGCATCAACCACTAACGAAAA
TATCTTAACCGATTATCTTTTGAAGAATACCGATGATGTTGAAGTTAAGAAGTACGTATTAAATCACTTCCTAGATGGTT
TCAAAGGAACTATTTTCAGACAAACTCAATTTGCTGAATTTGAAGACTTTGCCCACCAACAAGAACAAGCTGGTAACCCA
CTAACAGCTAAGATGTTAAGTGATTTTTACTACGAGCTAAACCAACGCTATTACGGTGACGGAGTGGTATCAGATCCAGA
AATTGCATATGAATGGGCTAGAATTCCGCACTTCTACATGAATTACTATGTATATCAATACGCAACTGGTTTTGCTGCCG
CGATTGATTTATCAGATGGCATTTGTGCCCACGACCAAGAAGCGATTGATAAATACATCGGATACCTAAAATCAGGTAGT
TCTGATTATCCATTAAACGTAATGAAAAAAGCTGGTATCGACATGACCAATGCCGACTACCTAGAAAATGCATTTAAGGT
CTTTGAAGAAAGATTAAACGAATTAGAATCATTAATTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(118-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1FRQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

98.664

0.503