Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K2W83_RS02680 Genome accession   NZ_CP080568
Coordinates   644033..645079 (+) Length   348 a.a.
NCBI ID   WP_054449850.1    Uniprot ID   A0A0R1FTR1
Organism   Apilactobacillus kunkeei strain DSMZ 12361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 639033..650079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2W83_RS02655 (K2W83_02655) - 639346..640620 (+) 1275 WP_054449845.1 insulinase family protein -
  K2W83_RS02660 (K2W83_02660) - 640610..641866 (+) 1257 WP_054449847.1 pitrilysin family protein -
  K2W83_RS02665 (K2W83_02665) - 641945..642793 (+) 849 WP_054449848.1 RodZ domain-containing protein -
  K2W83_RS02670 (K2W83_02670) pgsA 642841..643428 (+) 588 WP_053795309.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K2W83_RS02675 (K2W83_02675) - 643475..643942 (+) 468 WP_053795310.1 CinA family protein -
  K2W83_RS02680 (K2W83_02680) recA 644033..645079 (+) 1047 WP_054449850.1 recombinase RecA Machinery gene
  K2W83_RS02685 (K2W83_02685) rny 645273..646838 (+) 1566 WP_053795312.1 ribonuclease Y -
  K2W83_RS02690 (K2W83_02690) - 646918..647718 (+) 801 WP_053795313.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37412.18 Da        Isoelectric Point: 4.6018

>NTDB_id=594098 K2W83_RS02680 WP_054449850.1 644033..645079(+) (recA) [Apilactobacillus kunkeei strain DSMZ 12361]
MADERKAALDGALKRIEKEFGKGSIMRMGDRGDTRISTVPTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTIALQAVA
EVQKQGGTAAYIDAENALDPVYATNLGVNIDDLLLSQPDTGEQGLQICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEIRRAEQIKDGTDIIGNR
TKIKVAKNKVAPPFKRAEVDIMYGQGISQTGELVDMAVEQDIIGKSGSWYSYGEERIGQGRENAKQFLQDNPDKMEEINQ
KVRAAYGMGEDDSESGEAEQTSLDTGEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=594098 K2W83_RS02680 WP_054449850.1 644033..645079(+) (recA) [Apilactobacillus kunkeei strain DSMZ 12361]
ATGGCTGATGAACGAAAAGCGGCTCTAGATGGTGCCTTAAAACGAATTGAAAAAGAATTCGGTAAAGGTTCAATCATGAG
AATGGGAGACCGTGGAGATACAAGAATTTCCACTGTACCAACAGGGTCCTTAGCACTTGATAATGCATTAGGTGTTGGAG
GATTCCCACGAGGAAGAATTGTTGAAATTTATGGACCTGAAAGTTCAGGTAAGACTACCATTGCGCTACAAGCTGTTGCG
GAAGTACAAAAACAAGGTGGAACAGCAGCATACATTGATGCTGAAAATGCTTTGGATCCAGTATATGCTACCAACCTAGG
GGTAAACATTGATGATTTACTTCTATCACAACCTGATACTGGTGAACAAGGTCTACAAATTTGTGACGCCCTTGTATCTA
GTGGTGCCATTGATATCGTAGTTGTCGATTCAGTTGCGGCTTTAGTACCTAGAGCTGAAATTGAAGGTGAAATGGGTGAC
GCTCACGTTGGTTTGCAAGCTCGTTTAATGTCACAAGCACTACGTAAGTTATCTGGATCAATCAACAAGACTAAGACTAT
TGCTCTATTTATTAACCAGATTAGAGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCTC
TTAAATTCTACTCAACTATCAGATTAGAAATCAGAAGAGCTGAACAAATTAAAGATGGTACTGACATTATTGGTAACAGA
ACTAAGATCAAAGTTGCCAAGAATAAGGTAGCTCCTCCATTTAAGCGTGCCGAAGTTGATATCATGTACGGTCAAGGTAT
TTCACAAACTGGTGAATTAGTTGATATGGCCGTTGAACAAGACATCATTGGTAAGTCTGGTTCATGGTACTCATACGGTG
AAGAAAGAATTGGTCAAGGTCGTGAAAACGCAAAACAATTCTTACAAGATAATCCGGACAAAATGGAAGAAATTAACCAA
AAAGTTCGTGCTGCATATGGCATGGGTGAAGATGATTCTGAATCAGGTGAAGCTGAACAAACAAGTTTGGACACTGGTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1FTR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.966

100

0.819
  recA Bacillus subtilis subsp. subtilis str. 168

76.22

94.253

0.718
  recA Streptococcus mutans UA159

67.435

99.713

0.672
  recA Streptococcus mitis NCTC 12261

65.812

100

0.664
  recA Streptococcus mitis SK321

65.812

100

0.664
  recA Streptococcus pneumoniae R6

66.766

96.839

0.647
  recA Streptococcus pneumoniae Rx1

66.766

96.839

0.647
  recA Streptococcus pneumoniae D39

66.766

96.839

0.647
  recA Streptococcus pneumoniae TIGR4

66.766

96.839

0.647
  recA Streptococcus pyogenes NZ131

67.976

95.115

0.647
  recA Lactococcus lactis subsp. cremoris KW2

67.164

96.264

0.647
  recA Neisseria gonorrhoeae strain FA1090

63.83

94.54

0.603
  recA Neisseria gonorrhoeae MS11

63.83

94.54

0.603
  recA Neisseria gonorrhoeae MS11

63.83

94.54

0.603
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.943

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.54

0.578
  recA Acinetobacter baylyi ADP1

61.61

92.816

0.572
  recA Glaesserella parasuis strain SC1401

61.682

92.241

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.245

93.966

0.566
  recA Acinetobacter baumannii D1279779

60.991

92.816

0.566
  recA Pseudomonas stutzeri DSM 10701

60.494

93.103

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.372

92.816

0.56
  recA Vibrio cholerae strain A1552

60.372

92.816

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.851

98.563

0.56
  recA Helicobacter pylori 26695

56.364

94.828

0.534
  recA Helicobacter pylori strain NCTC11637

56.364

94.828

0.534