Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JMO07_RS07545 Genome accession   NZ_CP080564
Coordinates   1596325..1597011 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain HL16278     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591325..1602011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO07_RS07525 (JMO07_001508) rpsT 1592239..1592490 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  JMO07_RS07530 (JMO07_001509) holA 1592535..1593509 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  JMO07_RS07535 (JMO07_001510) comEC 1593566..1595767 (-) 2202 WP_020978202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JMO07_RS07540 (JMO07_001511) - 1595772..1596233 (-) 462 WP_000439693.1 ComE operon protein 2 -
  JMO07_RS07545 (JMO07_001512) comEA 1596325..1597011 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  JMO07_RS07550 (JMO07_001513) - 1597051..1597767 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  JMO07_RS07555 (JMO07_001514) rsfS 1597770..1598123 (-) 354 WP_001088022.1 ribosome silencing factor -
  JMO07_RS07560 (JMO07_001515) yqeK 1598124..1598708 (-) 585 WP_001019323.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JMO07_RS07565 (JMO07_001516) nadD 1598698..1599267 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JMO07_RS07570 (JMO07_001517) yhbY 1599270..1599560 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  JMO07_RS07575 (JMO07_001518) aroE 1599564..1600370 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  JMO07_RS07580 (JMO07_001519) yqeH 1600384..1601484 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=594030 JMO07_RS07545 WP_001792568.1 1596325..1597011(-) (comEA) [Staphylococcus aureus strain HL16278]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=594030 JMO07_RS07545 WP_001792568.1 1596325..1597011(-) (comEA) [Staphylococcus aureus strain HL16278]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969