Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JMO08_RS05795 | Genome accession | NZ_CP080562 |
| Coordinates | 1172466..1172936 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934768.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain HL21008 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1167466..1177936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMO08_RS15030 | - | 1167658..1167786 (+) | 129 | WP_258875003.1 | hypothetical protein | - |
| JMO08_RS05760 (JMO08_001152) | - | 1167779..1167946 (+) | 168 | WP_001285957.1 | DUF1270 domain-containing protein | - |
| JMO08_RS05765 (JMO08_001153) | - | 1167947..1168267 (+) | 321 | WP_000219666.1 | hypothetical protein | - |
| JMO08_RS05770 (JMO08_001154) | - | 1168361..1168621 (+) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| JMO08_RS05775 (JMO08_001155) | - | 1168630..1168893 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| JMO08_RS05780 (JMO08_001156) | - | 1168902..1170845 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| JMO08_RS05785 (JMO08_001157) | - | 1170847..1171767 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| JMO08_RS05790 (JMO08_001158) | - | 1171848..1172465 (+) | 618 | WP_071890040.1 | MBL fold metallo-hydrolase | - |
| JMO08_RS05795 (JMO08_001159) | ssbA | 1172466..1172936 (+) | 471 | WP_000934768.1 | single-stranded DNA-binding protein | Machinery gene |
| JMO08_RS05800 (JMO08_001160) | - | 1172966..1173853 (+) | 888 | WP_044422683.1 | DnaD domain protein | - |
| JMO08_RS05805 (JMO08_001161) | - | 1173860..1174078 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| JMO08_RS05810 (JMO08_001162) | - | 1174087..1174491 (+) | 405 | WP_000401973.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JMO08_RS05815 (JMO08_001163) | - | 1174504..1174881 (+) | 378 | WP_031875644.1 | SA1788 family PVL leukocidin-associated protein | - |
| JMO08_RS05820 (JMO08_001164) | - | 1174882..1175130 (+) | 249 | WP_001126832.1 | phi PVL orf 51-like protein | - |
| JMO08_RS05825 (JMO08_001165) | - | 1175143..1175544 (+) | 402 | WP_015978402.1 | hypothetical protein | - |
| JMO08_RS05830 (JMO08_001166) | - | 1175541..1175825 (+) | 285 | WP_001105618.1 | hypothetical protein | - |
| JMO08_RS05835 (JMO08_001167) | - | 1175818..1176066 (+) | 249 | WP_001065026.1 | DUF1024 family protein | - |
| JMO08_RS05840 (JMO08_001168) | - | 1176059..1176595 (+) | 537 | WP_031789556.1 | dUTPase | - |
| JMO08_RS05845 (JMO08_001169) | - | 1176632..1176805 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| JMO08_RS05850 (JMO08_001170) | - | 1176822..1177028 (+) | 207 | WP_031786300.1 | DUF1381 domain-containing protein | - |
| JMO08_RS05855 (JMO08_001171) | - | 1177025..1177219 (+) | 195 | WP_000132920.1 | hypothetical protein | - |
| JMO08_RS05860 (JMO08_001172) | - | 1177216..1177419 (+) | 204 | WP_001072795.1 | hypothetical protein | - |
| JMO08_RS05865 (JMO08_001173) | - | 1177412..1177648 (+) | 237 | WP_000608273.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17747.64 Da Isoelectric Point: 4.9816
>NTDB_id=593974 JMO08_RS05795 WP_000934768.1 1172466..1172936(+) (ssbA) [Staphylococcus aureus strain HL21008]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=593974 JMO08_RS05795 WP_000934768.1 1172466..1172936(+) (ssbA) [Staphylococcus aureus strain HL21008]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |