Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   M2M89_RS18605 Genome accession   NZ_CP097130
Coordinates   3632758..3633891 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain S16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627758..3638891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS18565 ywnA 3627922..3628323 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  M2M89_RS18570 ureC 3628458..3630167 (-) 1710 WP_128441903.1 urease subunit alpha -
  M2M89_RS18575 ureB 3630164..3630538 (-) 375 WP_003227726.1 urease subunit beta -
  M2M89_RS18580 ureA 3630535..3630852 (-) 318 WP_003227724.1 urease subunit gamma -
  M2M89_RS18585 - 3631044..3631204 (-) 161 Protein_3611 hypothetical protein -
  M2M89_RS20890 - 3631427..3631651 (-) 225 Protein_3612 urea ABC transporter substrate-binding protein -
  M2M89_RS18595 csbD 3631863..3632051 (-) 189 WP_015251021.1 stress response protein CsbD -
  M2M89_RS18600 - 3632124..3632603 (-) 480 WP_003244390.1 hypothetical protein -
  M2M89_RS18605 rapC 3632758..3633891 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  M2M89_RS18610 moaA 3634083..3635108 (-) 1026 WP_128441907.1 GTP 3',8-cyclase MoaA -
  M2M89_RS18615 fdhD 3635124..3635912 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  M2M89_RS18620 - 3636158..3636319 (-) 162 WP_003227706.1 hypothetical protein -
  M2M89_RS18625 ywmD 3636414..3637088 (-) 675 WP_003243553.1 VWA domain-containing protein -
  M2M89_RS18630 - 3637141..3637281 (-) 141 WP_014478246.1 hypothetical protein -
  M2M89_RS18635 ywmC 3637412..3638095 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=593728 M2M89_RS18605 WP_003227715.1 3632758..3633891(-) (rapC) [Bacillus subtilis strain S16]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=593728 M2M89_RS18605 WP_003227715.1 3632758..3633891(-) (rapC) [Bacillus subtilis strain S16]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTATATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTAGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424