Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   M2M89_RS09050 Genome accession   NZ_CP097130
Coordinates   1752497..1752928 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain S16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747497..1757928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS09030 spoVS 1748059..1748319 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  M2M89_RS09035 tdh 1748584..1749627 (+) 1044 WP_128441634.1 L-threonine 3-dehydrogenase -
  M2M89_RS09040 kbl 1749640..1750818 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  M2M89_RS09045 miaB 1750966..1752495 (+) 1530 WP_072175699.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  M2M89_RS09050 ymcA 1752497..1752928 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  M2M89_RS09055 cotE 1753190..1753735 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  M2M89_RS09060 hexA 1753868..1756444 (+) 2577 WP_064671396.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=593663 M2M89_RS09050 WP_003231834.1 1752497..1752928(+) (ymcA) [Bacillus subtilis strain S16]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=593663 M2M89_RS09050 WP_003231834.1 1752497..1752928(+) (ymcA) [Bacillus subtilis strain S16]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1