Detailed information NTG0589538

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EGT72_RS14745
• Genome accession: NZ_CP079792
• Coordinates: 2963494..2964078 (-)
• Length: 194 a.a.
• NCBI ID: WP_004691666.1
• Uniprot ID: A0A7H8SPE4
• Organism: Acinetobacter johnsonii strain AJ_082
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2952049..2964078	2963494..2964078	within	0

Gene organization within MGE regions

Location: 2952049..2964078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGT72_RS14680 (EGT72_014680)	-	2953139..2954029 (-)	891	WP_125281831.1	LysR substrate-binding domain-containing protein	-
EGT72_RS14685 (EGT72_014685)	-	2954164..2955582 (+)	1419	WP_125281830.1	aspartate ammonia-lyase	-
EGT72_RS14690 (EGT72_014690)	ssb	2955792..2956367 (-)	576	WP_094148577.1	single-stranded DNA-binding protein	Machinery gene
EGT72_RS14695 (EGT72_014695)	-	2956549..2957517 (+)	969	WP_012308653.1	IS30 family transposase	-
EGT72_RS14700 (EGT72_014700)	-	2958159..2958563 (+)	405	WP_004691434.1	transposase family protein	-
EGT72_RS14705 (EGT72_014705)	-	2958601..2958993 (+)	393	Protein_2855	transposase family protein	-
EGT72_RS14710 (EGT72_014710)	-	2959245..2959424 (+)	180	WP_125281869.1	helix-turn-helix transcriptional regulator	-
EGT72_RS14715 (EGT72_014715)	-	2959478..2960256 (+)	779	Protein_2857	IS3-like element ISAba22 family transposase	-
EGT72_RS14720 (EGT72_014720)	-	2960306..2961525 (+)	1220	WP_201704077.1	IS3 family transposase	-
EGT72_RS14725 (EGT72_014725)	-	2961567..2961956 (+)	390	Protein_2859	IS3 family transposase	-
EGT72_RS14735 (EGT72_014735)	-	2962249..2962392 (-)	144	Protein_2860	IS30 family transposase	-
EGT72_RS14740 (EGT72_014740)	-	2962712..2963212 (-)	501	WP_110976010.1	YqhA family protein	-
EGT72_RS14745 (EGT72_014745)	ssb	2963494..2964078 (-)	585	WP_004691666.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 194 a.a.
• Molecular weight: 21300.03 Da
• Isoelectric Point: 6.4819

>NTDB_id=589538 EGT72_RS14745 WP_004691666.1 2963494..2964078(-) (ssb) [Acinetobacter johnsonii strain AJ_082]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide

• Length: 585 bp

>NTDB_id=589538 EGT72_RS14745 WP_004691666.1 2963494..2964078(-) (ssb) [Acinetobacter johnsonii strain AJ_082]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGTTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCAGGTAATAGCAACAATCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

3D structure

• AlphaFold DB: A0A7H8SPE4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	50.246	100	0.526
ssb	Vibrio cholerae strain A1552	44.724	100	0.459
ssb	Neisseria meningitidis MC58	41.414	100	0.423
ssb	Neisseria gonorrhoeae MS11	41.414	100	0.423