Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | V060002_RS12950 | Genome accession | NZ_AP018677 |
| Coordinates | 2681523..2681903 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain V060002 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2676523..2686903
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V060002_RS12925 (V060002_02433) | - | 2677115..2677771 (+) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
| V060002_RS12930 (V060002_02434) | - | 2677782..2678627 (+) | 846 | WP_001002907.1 | CheR family methyltransferase | - |
| V060002_RS12935 (V060002_02435) | - | 2678627..2678998 (+) | 372 | WP_000757478.1 | response regulator | - |
| V060002_RS12940 (V060002_02436) | - | 2679007..2681280 (+) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| V060002_RS12945 (V060002_02437) | - | 2681270..2681530 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| V060002_RS12950 (V060002_02438) | pilL-C | 2681523..2681903 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| V060002_RS12955 (V060002_02439) | - | 2681911..2683146 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| V060002_RS12960 (V060002_02440) | - | 2683201..2683515 (-) | 315 | WP_000312387.1 | DMT family transporter | - |
| V060002_RS12965 (V060002_02441) | - | 2683661..2685175 (-) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| V060002_RS12970 (V060002_02442) | - | 2685331..2686737 (-) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=58930 V060002_RS12950 WP_000045526.1 2681523..2681903(+) (pilL-C) [Vibrio cholerae strain V060002]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=58930 V060002_RS12950 WP_000045526.1 2681523..2681903(+) (pilL-C) [Vibrio cholerae strain V060002]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |