Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KW861_RS00195 Genome accession   NZ_CP078505
Coordinates   38977..40023 (+) Length   348 a.a.
NCBI ID   WP_003128984.1    Uniprot ID   A0A4V0C8B6
Organism   Enterococcus gallinarum strain fecal_iso1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33977..45023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW861_RS00175 (KW861_00175) yfmH 34323..35621 (+) 1299 WP_103300716.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KW861_RS00180 (KW861_00180) - 35954..36859 (+) 906 WP_003128979.1 RodZ domain-containing protein -
  KW861_RS00185 (KW861_00185) pgsA 36971..37552 (+) 582 WP_005473048.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KW861_RS00190 (KW861_00190) cinA 37635..38873 (+) 1239 WP_003128983.1 competence/damage-inducible protein A Machinery gene
  KW861_RS00195 (KW861_00195) recA 38977..40023 (+) 1047 WP_003128984.1 recombinase RecA Machinery gene
  KW861_RS00200 (KW861_00200) rny 40275..41849 (+) 1575 WP_029487351.1 ribonuclease Y -
  KW861_RS00205 (KW861_00205) treR 41958..42674 (-) 717 WP_003128986.1 trehalose operon repressor -
  KW861_RS00210 (KW861_00210) pgmB 42728..43378 (-) 651 WP_003128987.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37518.71 Da        Isoelectric Point: 4.8221

>NTDB_id=587473 KW861_RS00195 WP_003128984.1 38977..40023(+) (recA) [Enterococcus gallinarum strain fecal_iso1]
MADDRKAALDAALKKIEKNYGKGAIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGRENAKNYMREHQEMMMEVSA
RVRDAYGIGTGETVIETEDAQEELPLDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=587473 KW861_RS00195 WP_003128984.1 38977..40023(+) (recA) [Enterococcus gallinarum strain fecal_iso1]
TTGGCAGATGATCGTAAAGCAGCTTTAGATGCTGCACTGAAAAAGATTGAAAAGAACTATGGTAAAGGTGCCATTATGAA
ACTTGGTGAGAAAGTCGATCAACAAATTTCGACGATTCCAAGTGGTTCATTGGCTTTGGATGTTGCTTTAGGTGTGGGTG
GTTATCCACGTGGACGTATTGTTGAAGTATATGGACCAGAAAGTTCTGGTAAAACGACAGTTGCTTTACACGCAATCGCT
GAAGTTCAAAAAGGTGGCGGAACAGCAGCCTTTATTGATGCAGAACATGCATTAGATCCTCAATATGCACAAAAATTGGG
TGTAAATATCGATGATTTGCTGCTATCTCAGCCCGATACAGGTGAGCAAGGTCTTGAGATCGCTGATGCTTTAGTATCAA
GTGGAGCTGTCGATATTGTTGTTATCGACTCGGTTGCCGCTTTGGTACCAAGAGCTGAGATCGATGGTGAGATGGGTGAT
ACCCACGTTGGTCTTCAAGCCCGGTTGATGTCTCAAGCATTGCGTAAATTATCTGGATCAATCAATAAGACCAAAACAAT
TGCGATTTTTATCAATCAAATTCGTGAAAAAGTTGGGATCATGTTCGGTAATCCTGAAACAACTCCTGGTGGACGTGCGC
TTAAATTCTATTCGACGATTCGATTAGAGGTACGACGTGCAGAACAATTAAAATCCGGGACAGACATTATCGGAAACCGG
ACAAAAATCAAAGTTGTCAAAAATAAAGTAGCGCCACCTTTTAAAGTTGCTGAAGTAGACATGATGTATGGACAAGGAAT
CTCTCAAGAGGGAGAGTTGCTTGATATGGCAGTAGAGCAAGACATTGTTGATAAGAGCGGTGCTTGGTATGCTTATAAAG
GAGATCGCATTGGTCAGGGGCGGGAAAACGCGAAAAACTATATGCGTGAACATCAAGAAATGATGATGGAAGTTTCTGCT
CGTGTTCGCGATGCGTACGGCATTGGTACCGGAGAAACGGTCATTGAAACAGAAGATGCGCAAGAAGAACTACCATTAGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0C8B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.765

97.989

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

77.538

93.391

0.724
  recA Streptococcus pneumoniae D39

65.556

100

0.678
  recA Streptococcus pneumoniae R6

65.556

100

0.678
  recA Streptococcus pneumoniae TIGR4

65.556

100

0.678
  recA Streptococcus pneumoniae Rx1

65.556

100

0.678
  recA Streptococcus mitis NCTC 12261

65.73

100

0.672
  recA Streptococcus mitis SK321

64.888

100

0.664
  recA Streptococcus mutans UA159

66.379

100

0.664
  recA Streptococcus pyogenes NZ131

68.58

95.115

0.652
  recA Lactococcus lactis subsp. cremoris KW2

68.389

94.54

0.647
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

94.54

0.595
  recA Neisseria gonorrhoeae MS11

61.702

94.54

0.583
  recA Neisseria gonorrhoeae MS11

61.702

94.54

0.583
  recA Neisseria gonorrhoeae strain FA1090

61.702

94.54

0.583
  recA Ralstonia pseudosolanacearum GMI1000

61.585

94.253

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.79

94.54

0.575
  recA Acinetobacter baumannii D1279779

58.187

98.276

0.572
  recA Acinetobacter baylyi ADP1

61.111

93.103

0.569
  recA Pseudomonas stutzeri DSM 10701

61.3

92.816

0.569
  recA Helicobacter pylori 26695

56.772

99.713

0.566
  recA Helicobacter pylori strain NCTC11637

56.772

99.713

0.566
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

93.103

0.56
  recA Vibrio cholerae strain A1552

60.185

93.103

0.56
  recA Glaesserella parasuis strain SC1401

59.938

92.529

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

93.391

0.552