Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWZ00_RS08895 Genome accession   NZ_CP078115
Coordinates   1692046..1692441 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687046..1697441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS12070 - 1691825..1691944 (+) 120 Protein_1740 competence protein ComE -
  KWZ00_RS08895 (KWZ00_08895) comE 1692046..1692441 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWZ00_RS12365 - 1692375..1692522 (-) 148 Protein_1742 peptidase -
  KWZ00_RS08900 (KWZ00_08900) - 1693075..1693314 (-) 240 WP_012503951.1 membrane protein -
  KWZ00_RS08905 (KWZ00_08905) - 1693311..1693607 (-) 297 WP_003689859.1 hypothetical protein -
  KWZ00_RS08915 (KWZ00_08915) - 1693835..1694062 (+) 228 WP_153707886.1 hypothetical protein -
  KWZ00_RS08920 (KWZ00_08920) aroG 1694224..1695279 (+) 1056 WP_047918906.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  KWZ00_RS08925 (KWZ00_08925) - 1695347..1695835 (+) 489 WP_010359207.1 dihydrofolate reductase -
  KWZ00_RS08930 (KWZ00_08930) - 1695865..1696340 (-) 476 Protein_1748 CYTH domain-containing protein -
  KWZ00_RS08935 (KWZ00_08935) - 1696352..1696780 (-) 429 WP_020997399.1 CopD family protein -
  KWZ00_RS08940 (KWZ00_08940) - 1696892..1697137 (+) 246 WP_003689849.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=586947 KWZ00_RS08895 WP_003703428.1 1692046..1692441(+) (comE) [Neisseria gonorrhoeae strain O1G1370]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=586947 KWZ00_RS08895 WP_003703428.1 1692046..1692441(+) (comE) [Neisseria gonorrhoeae strain O1G1370]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1