Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | MY487_RS10015 | Genome accession | NZ_CP096033 |
| Coordinates | 2078203..2079339 (+) | Length | 378 a.a. |
| NCBI ID | WP_012117791.1 | Uniprot ID | A7Z5Q9 |
| Organism | Bacillus amyloliquefaciens strain GL18 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2073203..2084339
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY487_RS09980 (MY487_09980) | phyC | 2073248..2074399 (-) | 1152 | WP_012117785.1 | 3-phytase | - |
| MY487_RS09985 (MY487_09985) | - | 2074715..2075140 (+) | 426 | WP_003153663.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| MY487_RS09990 (MY487_09990) | sprB | 2075174..2075350 (-) | 177 | WP_003153662.1 | recombination directionality factor SprB | - |
| MY487_RS09995 (MY487_09995) | - | 2075712..2075969 (-) | 258 | WP_023356967.1 | DUF3221 domain-containing protein | - |
| MY487_RS10000 (MY487_10000) | - | 2076511..2076747 (+) | 237 | WP_077411073.1 | hypothetical protein | - |
| MY487_RS10005 (MY487_10005) | - | 2076873..2077247 (+) | 375 | WP_007407921.1 | YoqO family protein | - |
| MY487_RS10010 (MY487_10010) | - | 2077481..2077933 (-) | 453 | WP_012117790.1 | hypothetical protein | - |
| MY487_RS10015 (MY487_10015) | rapF | 2078203..2079339 (+) | 1137 | WP_012117791.1 | Rap family tetratricopeptide repeat protein | Regulator |
| MY487_RS10020 (MY487_10020) | - | 2079329..2079511 (+) | 183 | WP_041482200.1 | hypothetical protein | - |
| MY487_RS10025 (MY487_10025) | - | 2079542..2080168 (-) | 627 | Protein_1926 | DNA polymerase | - |
| MY487_RS10030 (MY487_10030) | - | 2080234..2081646 (-) | 1413 | WP_012117793.1 | MBL fold metallo-hydrolase | - |
| MY487_RS10035 (MY487_10035) | - | 2081805..2083004 (-) | 1200 | WP_012117794.1 | FAD/NAD(P)-binding oxidoreductase | - |
| MY487_RS10040 (MY487_10040) | - | 2083183..2083829 (-) | 647 | Protein_1929 | response regulator transcription factor | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 44525.17 Da Isoelectric Point: 5.0394
>NTDB_id=585797 MY487_RS10015 WP_012117791.1 2078203..2079339(+) (rapF) [Bacillus amyloliquefaciens strain GL18]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKDEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKVS
DLLEKIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKLAVVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGNMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVEGKQVCKQGLTLSKALNDDVLGKMFDFLMGLFVENDKDRLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKDEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKVS
DLLEKIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKLAVVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGNMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVEGKQVCKQGLTLSKALNDDVLGKMFDFLMGLFVENDKDRLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI
Nucleotide
Download Length: 1137 bp
>NTDB_id=585797 MY487_RS10015 WP_012117791.1 2078203..2079339(+) (rapF) [Bacillus amyloliquefaciens strain GL18]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTGTTCAGTGTTGC
AGATGCAGAAATTCTAAAGGATGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGACTTATTGTTGTACTATT
CGCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGCCCAAAAGTTTCA
GACTTATTAGAAAAGATCGAAAGTAAACAAAGTGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAGGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGTTAGCCGTTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAGGTAGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCGCACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGAAATATGGAGAAAGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTACTAGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTGTTCAACACGGTTGAGGGAAAACAGGTTTGTAAACAAGGTCTCACGCTATCAAAGG
CGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGACCGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACCGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTGTTCAGTGTTGC
AGATGCAGAAATTCTAAAGGATGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGACTTATTGTTGTACTATT
CGCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGCCCAAAAGTTTCA
GACTTATTAGAAAAGATCGAAAGTAAACAAAGTGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAGGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGTTAGCCGTTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAGGTAGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCGCACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGAAATATGGAGAAAGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTACTAGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTGTTCAACACGGTTGAGGGAAAACAGGTTTGTAAACAAGGTCTCACGCTATCAAAGG
CGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGACCGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACCGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
45.669 |
100 |
0.46 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
45.767 |
100 |
0.458 |