Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   MDRSPN_RS08545 Genome accession   NZ_AP018391
Coordinates   1638784..1639494 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain MDRSPN001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633784..1644494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDRSPN_RS08525 (MDRSPN_01626) - 1634328..1634576 (-) 249 WP_000364990.1 YneF family protein -
  MDRSPN_RS08530 (MDRSPN_01627) treC 1634832..1636457 (-) 1626 WP_000171199.1 alpha,alpha-phosphotrehalase -
  MDRSPN_RS08540 (MDRSPN_01628) treP 1636635..1638599 (-) 1965 WP_000514348.1 PTS system trehalose-specific EIIBC component -
  MDRSPN_RS08545 (MDRSPN_01629) treR 1638784..1639494 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  MDRSPN_RS08555 - 1639649..1640904 (+) 1256 WP_408990149.1 ISL3 family transposase -
  MDRSPN_RS08560 (MDRSPN_01632) - 1641019..1642275 (+) 1257 WP_000436628.1 ISL3 family transposase -
  MDRSPN_RS08565 (MDRSPN_01633) - 1642456..1643382 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  MDRSPN_RS08570 (MDRSPN_01634) amiE 1643393..1644460 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=58561 MDRSPN_RS08545 WP_000760673.1 1638784..1639494(+) (treR) [Streptococcus pneumoniae strain MDRSPN001]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=58561 MDRSPN_RS08545 WP_000760673.1 1638784..1639494(+) (treR) [Streptococcus pneumoniae strain MDRSPN001]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment