Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   EP178_RS03945 Genome accession   NZ_AP018377
Coordinates   671296..671973 (+) Length   225 a.a.
NCBI ID   WP_003688801.1    Uniprot ID   Q5F8S9
Organism   Neisseria gonorrhoeae strain FC428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 666296..676973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP178_RS03925 (NgFC428_00680) leuD 667111..667752 (-) 642 WP_010357988.1 3-isopropylmalate dehydratase small subunit -
  EP178_RS03930 (NgFC428_00681) - 667814..668068 (-) 255 WP_003688807.1 hypothetical protein -
  EP178_RS03935 (NgFC428_00682) leuC 668163..669572 (-) 1410 WP_003701383.1 3-isopropylmalate dehydratase large subunit -
  EP178_RS03940 (NgFC428_00683) gshA 669824..671173 (+) 1350 WP_003688804.1 glutamate--cysteine ligase -
  EP178_RS14865 - 671147..671269 (-) 123 WP_255294323.1 hypothetical protein -
  EP178_RS03945 (NgFC428_00684) ysxA/radC 671296..671973 (+) 678 WP_003688801.1 RadC family protein Machinery gene
  EP178_RS03950 (NgFC428_00685) - 672046..672771 (+) 726 WP_003688798.1 epoxyqueuosine reductase QueH -
  EP178_RS03955 (NgFC428_00686) - 672923..674203 (+) 1281 WP_003691265.1 CAP domain-containing protein -
  EP178_RS03960 (NgFC428_00687) hflX 674209..675387 (+) 1179 WP_003688795.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25108.88 Da        Isoelectric Point: 5.1699

>NTDB_id=58308 EP178_RS03945 WP_003688801.1 671296..671973(+) (ysxA/radC) [Neisseria gonorrhoeae strain FC428]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILEEELQEEITLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=58308 EP178_RS03945 WP_003688801.1 671296..671973(+) (ysxA/radC) [Neisseria gonorrhoeae strain FC428]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGCGATGC
CGAACTTTTGGCAATCCTTTTACGCGTCGGGACGCGCGGGATGAGCGCGGTCGATTTGGCGCGCTACCTATTGCAGGAGT
TCGGCAGCTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGAGGAAGAATTGCAGGAAGAAATTACCTTATCCGATCCCGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCCATGTCGCTGGTTGATGTTTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F8S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.382
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment