Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   I6L84_RS00500 Genome accession   NZ_CP077224
Coordinates   87254..88903 (-) Length   549 a.a.
NCBI ID   WP_060554269.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 82254..93903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS00485 (I6L84_00485) rpsD 82550..83161 (+) 612 WP_008810013.1 30S ribosomal protein S4 -
  I6L84_RS00490 (I6L84_00490) comA 83616..85769 (+) 2154 WP_060554271.1 peptide cleavage/export ABC transporter ComA Regulator
  I6L84_RS00495 (I6L84_00495) comB 85779..87137 (+) 1359 WP_060554270.1 competence pheromone export protein ComB Regulator
  I6L84_RS00500 (I6L84_00500) lytF 87254..88903 (-) 1650 WP_060554269.1 GBS Bsp-like repeat-containing protein Regulator
  I6L84_RS00505 (I6L84_00505) purD 89147..90406 (+) 1260 WP_060554268.1 phosphoribosylamine--glycine ligase -
  I6L84_RS00510 (I6L84_00510) - 90461..91654 (+) 1194 WP_060954916.1 ATP-grasp domain-containing protein -
  I6L84_RS00515 (I6L84_00515) purE 91674..92162 (+) 489 WP_060554267.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6L84_RS00520 (I6L84_00520) purK 92149..93228 (+) 1080 WP_060554266.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6L84_RS00525 (I6L84_00525) - 93349..93615 (+) 267 WP_111705913.1 hypothetical protein -
  I6L84_RS00530 (I6L84_00530) - 93635..93862 (+) 228 WP_060554265.1 hypothetical protein -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 60493.21 Da        Isoelectric Point: 9.4781

>NTDB_id=579995 I6L84_RS00500 WP_060554269.1 87254..88903(-) (lytF) [Streptococcus gordonii strain FDAARGOS 1454]
MKKYKNFLLLSATLLTSLSAPLAAANEQFSPSQLTAMTSEVSVQLEGQTAIVQYQPTTAQEAYPIQHAVWSEEGGQDDIV
WYSANQSTTRIDLSQHKGQGKFHIETYLNVNGVKYHLSSKSVFLNKPVQSAEKTVPEQQNSTSSNNATPQAPAEQKPTNP
APSPAPAPATNRVENRRNSYQKVEDRNKSLPPQKVAQPKATPPQAKPSNNKPLQASAARVPAEPVRDSKPLISITNINKE
NGTYTVRVQESPYSKRIKSVQVPIWSTANQSNLKWYEASQIGNGSFSVQFDIRNHQQLYGDYINHVYITYEDGSRAGYVA
ENVNLPQPAPQPLTPSLQVVHKGQSTYQVILQNSFGDGHILFPIWSDINGQDDLRWYTANSLGNGRYSLDFNANNHIGDG
LYHVHVYRQSGGKVTGVMASNFQVTRPTVTVRKPLNHATDPSNTYPVGECTWGAKALAPWAGNWWGNGGDWAASARRAGF
RVGSTPQVGAIACWTDGGYGHVGVVTHVDSHKRIQIQESNYAGQRYIANFRGWFDPTIAQGTVSYIYPN

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=579995 I6L84_RS00500 WP_060554269.1 87254..88903(-) (lytF) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAAAAAATACAAAAATTTCTTACTGCTTTCAGCAACCTTGCTGACCTCACTATCCGCTCCATTAGCTGCAGCGAATGA
ACAGTTTAGCCCATCCCAGCTGACGGCTATGACCAGCGAAGTTTCCGTTCAGCTTGAAGGACAAACAGCGATTGTTCAGT
ATCAACCGACCACTGCGCAAGAAGCTTACCCCATCCAACATGCCGTCTGGTCTGAGGAGGGTGGCCAAGACGATATTGTC
TGGTATTCAGCTAATCAAAGCACGACCAGGATTGACTTGTCTCAGCACAAGGGCCAGGGCAAATTTCACATCGAGACTTA
TCTCAATGTAAATGGTGTCAAATATCACTTGAGTAGTAAATCGGTCTTTCTAAACAAGCCGGTTCAATCAGCCGAAAAAA
CTGTCCCTGAACAACAAAACAGCACTTCGTCTAACAATGCTACACCTCAAGCGCCTGCTGAGCAAAAGCCAACTAATCCA
GCACCTTCTCCAGCTCCGGCCCCCGCGACCAATAGAGTTGAAAACCGTCGGAACTCCTATCAAAAAGTCGAAGATCGAAA
CAAATCTCTTCCTCCTCAAAAGGTAGCTCAACCAAAGGCGACACCCCCTCAGGCAAAGCCAAGCAATAACAAACCTCTGC
AAGCTTCAGCTGCTAGAGTACCAGCAGAGCCTGTCAGAGACAGCAAGCCACTCATCAGTATTACCAACATTAATAAGGAA
AATGGAACCTATACCGTAAGGGTCCAAGAAAGTCCTTATTCTAAGAGAATAAAAAGTGTGCAGGTGCCTATTTGGAGTAC
TGCTAATCAAAGCAATCTTAAATGGTATGAGGCTTCACAAATAGGCAACGGAAGCTTCTCCGTTCAATTCGATATCCGAA
ATCACCAGCAGCTTTACGGCGACTATATCAATCACGTCTACATTACCTATGAAGACGGTAGCCGAGCTGGCTATGTTGCT
GAAAATGTCAATCTGCCTCAGCCAGCACCCCAACCACTAACTCCGAGTCTGCAAGTGGTCCATAAAGGCCAATCGACCTA
TCAAGTTATCTTACAAAATAGTTTCGGTGACGGCCATATTCTCTTCCCCATCTGGTCAGATATTAATGGCCAAGACGACC
TCCGCTGGTATACAGCTAATTCTCTTGGTAATGGGCGCTATTCGTTAGATTTCAACGCCAACAATCATATCGGTGACGGT
CTCTATCATGTCCATGTCTATCGACAATCTGGTGGGAAAGTAACGGGTGTCATGGCCTCTAATTTTCAAGTGACACGCCC
AACGGTAACTGTGAGAAAACCTCTTAACCATGCAACCGACCCAAGTAACACCTACCCTGTTGGTGAATGTACATGGGGTG
CCAAGGCTCTCGCTCCTTGGGCAGGAAACTGGTGGGGAAATGGTGGGGACTGGGCAGCCAGTGCTCGCCGAGCAGGATTC
CGTGTAGGATCCACACCTCAGGTCGGAGCCATTGCCTGCTGGACTGACGGTGGATACGGACATGTCGGCGTCGTCACGCA
TGTTGATTCACATAAGCGTATCCAAATTCAGGAATCCAACTACGCTGGACAGCGCTATATCGCTAATTTCCGTGGCTGGT
TTGACCCAACCATCGCTCAGGGCACGGTTTCCTATATCTACCCAAATTAA

Domains

Predicted by InterproScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(342-414)

GBS Bsp-like repeat (GBS_Bsp-like)

(59-113)

GBS Bsp-like repeat (GBS_Bsp-like)

(234-319)

CHAP domain (CHAP)

(443-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

100

100

1
  lytF Streptococcus gordonii str. Challis substr. CH1

95.446

100

0.954